Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008735.1 Corchorus capsularis cultivar CVL-1 contig08756, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64192

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
549--594
2
23.5
2
91
4
76
54
0
0
45
0.99
898--938
14
3.1
14
86
13
59
9
26
9
53
1.65
6831--6855
13
1.9
13
100
0
50
40
0
8
52
1.31
7056--7084
15
1.9
15
100
0
58
34
24
6
34
1.82
7862--7889
2
14.0
2
100
0
56
50
0
0
50
1.00
10396--10431
17
2.1
17
100
0
72
36
5
33
25
1.79
12047--12192
73
2.0
73
91
0
238
38
10
28
22
1.87
12252--12292
22
1.9
21
85
5
55
34
7
41
17
1.77
12716--13033
87
3.7
86
92
2
512
44
6
15
34
1.72
16700--16740
21
2.0
21
95
0
73
46
14
26
12
1.80
16702--16748
21
2.2
21
84
0
58
51
12
27
8
1.69
29886--29956
24
2.8
25
79
14
65
40
9
2
46
1.52
32544--32578
18
2.1
16
89
10
52
65
11
5
17
1.43
48809--48833
13
1.9
13
100
0
50
80
8
12
0
0.92
51233--51266
11
3.2
10
84
15
50
50
17
2
29
1.61
54000--54024
9
2.8
9
100
0
50
92
0
8
0
0.40
61199--61226
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!