Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01008740.1 Corchorus capsularis cultivar CVL-1 contig08761, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44598
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Found at i:8661 original size:785 final size:780
Alignment explanation
Indices: 5297--9537 Score: 4692
Period size: 785 Copynumber: 5.4 Consensus size: 780
5287 GTCAGGTCTA
* * * *
5297 CTGCCACCTGAGCTCTAGTAACACTATCATGAATTGATTCCTTGATAAAGTCATAAAAATCATTC
1 CTGCCAGCTGAGCTCTACTAACACTAACATGAATTGAGTCCTTGATAAAGTCATAAAAATCATTC
* * * *
5362 ATATCCTTTGGATCATACTTCAACATACCTTTAAGTAGAGTTATTTGATCATCCTCAAAGAAAAT
66 ATATCCTTTGAATCATACTTCAACATACCTTCAAGTAGAGCTATTTCATCATCCTCAAAGAAAAT
* * * * *
5427 CGTCCGAAAAAAAGTGGCCA-TGCTCTTCACAGTAGTCTCTTATTCCTCAACGACACTCTTGGCC
131 CCTCCG-AAAAAA-TGG-CATTGCTCTTCACAGCAATCTCTT-TTTCTCAACAACACTCTTGGCC
* *
5491 CGTTTTGATTTCTTGAGTGGTAGGTCGGATTCCCTAGCTTTCTTAGCAGAAGTTTGTGCCTTGGA
192 CGTTTTGATTTCTTGAGTGGTAGGTCGGATTCCCTAGCTCTCTTAGCAGAAGTTTGAGCCTTGGA
* * * * * **
5556 AATCAGTTTTTTGCCAATGGGTTTGGAGAATTCTTTGCAACCATAACGGAGTCAGAATCGGAATT
257 AATCAGCTTTTTGCCAATGGGTTCGGAGAATTCTTTGCAACCATACCAGAGTTAGAATAAGAATT
* * * * * * *
5621 ACCGTCGCAGTCACTGCCATCAAAATTCTCATCTTTTTCTTCAATCGGGTTTGCTTGTAACTTTT
322 ACCGTCCCAGTCAC-GCCACCAGAATTCTCATATTTTTCTTCAACCGGGTTTGTTTGTAGCTTTT
* * * * *
5686 TTGGGACTGGTGTGTTTTGGGGACTGGTTTTGGACTCATCTTCTCGCTTCTCGTCATTGGAAGAA
386 GTGGGATTGGTGTGTTTTGGGGTCCGGTTTTGGACTCATCTTCTTGCTTCTCGTCATTGGAAGAA
* * * * *
5751 GAAGAACAGTCATGATCCTTTTCATCTTCT-TCAAAGGAAGG-AGAAGGATTTTCAATTAGATTG
451 GAAGAAGACTCCTGATCCTTTTCATCTTCTCT-AAAGGAAGGAAG-AGGATTTTCGATTGGATTG
* * * * * *
5814 GAATGCTTTTGTGTCATGGATGAAAAGAGTTTCTAGGTTCTAGTTGATTGATAGTGGAGTAGTGA
514 GGATGCTTTCGTGCCATGGATGAAGAGAGTTTCTAGGTTCTAGTTGATTGATGGTGGAGTGGTGA
* * *
5879 CAGTGGAATGTATGAGAAGAGAAATTTATATGGGAAT-GGAAAAGCCAACAGAC----TAAGTTG
579 CAGTAGAATGTATGGGAAGAGAAATTTATATGGGAATGGGAAGA-CCAACAGACTAATTAAGTTG
* * * * * * * *
5939 TAATCAAGTCTCTTTGCTCCATATTTTCTTGGAAAATTTATAGGATTTTTTATCATGAAGATTTG
643 TAATCAAGTCTCTTTGCCCCAAATTCTCTTGGACAATTCAGAGAATTTTTTATCATGAAG--CTG
* * *
6004 AAAAGAATAAGTCTTTTCCGTTCTTACATCTTTTA-CTAAGATTTTAATATTTTTTCTTCAACCT
706 AAAAGAATAAGTCTTTTCTGTTCTTACATCTCTTAGC-AAGATTTTCATATTTTTTCTTCAACCT
*
6068 CCTCACCTTAT
770 CCTCACCTTGT
* * * * * * * *
6079 CTGCCATCCGAACTCTACTAACACTAACATGAATCGAGGCTTTGATAAAGTCATAAAAATAATTT
1 CTGCCAGCTGAGCTCTACTAACACTAACATGAATTGAGTCCTTGATAAAGTCATAAAAATCATTC
* * * ** *
6144 GTATTCTTGGAATCATACTTCAACATATTTTCAAGTAGAGCTATTTCATCATCCTCAGAGAAAAT
66 ATATCCTTTGAATCATACTTCAACATACCTTCAAGTAGAGCTATTTCATCATCCTCAAAGAAAAT
* * * * * *
6209 CCTCCGAAAAAATGGCCTTGCTCTTCACAGTATTCTCTTCTTCTTTAACAACACTC-TGGCCCAT
131 CCTCCGAAAAAATGGCATTGCTCTTCACAGCAATCTCTTTTTC-TCAACAACACTCTTGGCCCGT
* ** * * *
6273 TTTAATTTCTTGAGTGGTAGGTCATATTCCCCAGCTCTCTAAGAAGAAGTTTGAGCCTTGGAAAT
195 TTTGATTTCTTGAGTGGTAGGTCGGATTCCCTAGCTCTCTTAGCAGAAGTTTGAGCCTTGGAAAT
* * * * ** * * * *
6338 CAAAC-TTTTGCTAATGACGTTCGGAGAAATTTTTTGCAGTCAAACCGGAGTTGGAATCAGAATT
260 C-AGCTTTTTGCCAATG-GGTTCGGAG-AATTCTTTGCAACCATACCAGAGTTAGAATAAGAATT
* * * * * *
6402 ATCGTCCTAGTCACCGCCACTAGAATTCTTATGTTCTTCTTCAACCGGGTTTGTTTTGTAGCTTT
322 ACCGTCCCAGTCA-CGCCACCAGAATTCTCATATTTTTCTTCAACCGGGTTTG-TTTGTAGCTTT
* * * * * * *
6467 TATGGGATTGATATGTTTTGGAGTCCGGTTTTGGGCTCATCTTCTTACTTTTCGTCATTGGAAGA
385 TGTGGGATTGGTGTGTTTTGGGGTCCGGTTTTGGACTCATCTTCTTGCTTCTCGTCATTGGAAGA
* * * * * *
6532 AGAAGAAGACTCCTGATCCTTTTTAAT-TTCTCCAAAGGCA-GAAGAAGGATTTTTGATTGGCTA
450 AGAAGAAGACTCCTGATCC-TTTTCATCTTCTCTAAAGGAAGGAAG-AGGATTTTCGATTGGATT
* * * *
6595 GGGATGCTTTCGTTCCATGGATGAGGAGAGTTT-TGGGTTCTTGTTGATTGATGGTGGAGTGGTG
513 GGGATGCTTTCGTGCCATGGATGAAGAGAGTTTCTAGGTTCTAGTTGATTGATGGTGGAGTGGTG
* *
6659 ACAGTAGAATGTATGGGAAGAGAAATTTATATGGGAATGGGAAGACCAACTGACTAACTAAGTTG
578 ACAGTAGAATGTATGGGAAGAGAAATTTATATGGGAATGGGAAGACCAACAGACTAATTAAGTTG
* * ** * *
6724 TAATCAAGTCTCTTTGCCCCAAATTCTCTTGGAGAGTTCATTGGATTTTTTATCATGATGCTTTG
643 TAATCAAGTCTCTTTGCCCCAAATTCTCTTGGACAATTCAGAGAATTTTTTATCATGAAGC--TG
* * *
6789 AAAAGAATAAGTTTTTTTTTCCGTTCTTAGATCTCTTAGCAAGATTTTCATATTTTTTCTTCAAC
706 AAAAGAATAAG---TCTTTTCTGTTCTTACATCTCTTAGCAAGATTTTCATATTTTTTCTTCAAC
*
6854 CTGCTCACCTTGT
768 CTCCTCACCTTGT
* * * * * *
6867 CTGCTAGCTGAGCTCTACTTACACTAAAATGAATTGAGTCCGTGATAAATTCATAAAAATGATTC
1 CTGCCAGCTGAGCTCTACTAACACTAACATGAATTGAGTCCTTGATAAAGTCATAAAAATCATTC
* ** * *
6932 ATATCATTTGAATCATACTTCAACATATATTCAAGTAGAGCCATTTCATTATCCTCAAAGAAAAT
66 ATATCCTTTGAATCATACTTCAACATACCTTCAAGTAGAGCTATTTCATCATCCTCAAAGAAAAT
* *
6997 CCTCCGAAAAAATGGCATTGCTCTTCACAACAATCTCTTCTTTCTCAACGACACTCTTGGCCCGT
131 CCTCCGAAAAAATGGCATTGCTCTTCACAGCAATCTCTT-TTTCTCAACAACACTCTTGGCCCGT
* * * * * *
7062 TTTGATTTCTTGAGTGTTAGGTCGGATTCCCTAGCTCTCATAACAGAAGTTTGAGCATCGGATAT
195 TTTGATTTCTTGAGTGGTAGGTCGGATTCCCTAGCTCTCTTAGCAGAAGTTTGAGCCTTGGAAAT
* * ** * *
7127 CAGCCTTTTGCC-ATGGATTCAAAGAATTCTTTGCAGCCATACCAGAGTTAGAATAAGAATGACC
260 CAGCTTTTTGCCAATGGGTTCGGAGAATTCTTTGCAACCATACCAGAGTTAGAATAAGAATTACC
* * * * * *
7191 CTCCCAATCACTGCCACCAGAATTCTCATCTTTTTCTTCAACCAGGTTTGTTTATAGCCTTTGTG
325 GTCCCAGTCAC-GCCACCAGAATTCTCATATTTTTCTTCAACCGGGTTTGTTTGTAGCTTTTGTG
* * *
7256 AGATTGGTGTGTTTTGGGGTCCGGTTTTGGACTCATCCTCTTGCTTCTCATCATTGGAAGAAGAA
389 GGATTGGTGTGTTTTGGGGTCCGGTTTTGGACTCATCTTCTTGCTTCTCGTCATTGGAAGAAGAA
* * * *
7321 GAAGACTCATGATCTTTTTCATCTTCTCCAAAGGAATGAAGAGGATTTTCGATTGGATTGGGATG
454 GAAGACTCCTGATCCTTTTCATCTTCTCTAAAGGAAGGAAGAGGATTTTCGATTGGATTGGGATG
*
7386 CTTTCGTGCCATGGATGAAGAGAGTTTCTAGGTTCTAGTTGATTGATGGTGGACTGGTGACAGTA
519 CTTTCGTGCCATGGATGAAGAGAGTTTCTAGGTTCTAGTTGATTGATGGTGGAGTGGTGACAGTA
* * * * *
7451 GAATGTATGGGAAGATAAATTTCTATGGGAATGTGAAGCCCAACAGACTAATTAAGTTGTAACCA
584 GAATGTATGGGAAGAGAAATTTATATGGGAATGGGAAGACCAACAGACTAATTAAGTTGTAATCA
* * * * * *
7516 AGTCTATTTGCCCTAAATTCACTTGGACAGTTCAGATGATTTTTTTTATCATGAAGTTTTGAAAA
649 AGTCTCTTTGCCCCAAATTCTCTTGGACAATTCAGA-GA-ATTTTTTATCATGAAG--CTGAAAA
* * * *
7581 GAAT--GTGTTTTTTGTTCTTATATCTCTTGGCAAGATTTTCAT-TTTTTTCCTTCAACCTCCTC
710 GAATAAGTCTTTTCTGTTCTTACATCTCTTAGCAAGATTTTCATATTTTTT-CTTCAACCTCCTC
*
7643 A-TTGTGT
774 ACCT-TGT
* * * *
7650 CTACCAGCTGAGCTCTACTAGCACTTACATGAATTGAGTCCTTGAAAAAGTCATAAAAA-CTATT
1 CTGCCAGCTGAGCTCTACTAACACTAACATGAATTGAGTCCTTGATAAAGTCATAAAAATC-ATT
* * * *
7714 CGTATCCTTTGAATCATACTTCAACATACCTTCAAATAGAGCAATTTCATCATTCT-AAGAGAAA
65 CATATCCTTTGAATCATACTTCAACATACCTTCAAGTAGAGCTATTTCATCATCCTCAA-AGAAA
* * * *** * **
7778 ATCCTCCGAAAAACTAGCATTGCTCATCACAATGATCTCTTCTTTCTCAACAACACTCTTTGCTT
129 ATCCTCCGAAAAAATGGCATTGCTCTTCACAGCAATCTCTT-TTTCTCAACAACACTCTTGGCCC
* ** * *
7843 GTTTTGATTTCTTTAGTGGTAGGTCAAATTCCCTAGCTCTCTTAGTAGAAGTTTGATCCTTGGAA
193 GTTTTGATTTCTTGAGTGGTAGGTCGGATTCCCTAGCTCTCTTAGCAGAAGTTTGAGCCTTGGAA
* * * * *
7908 ATCAGCTTTTTGCCAATGAGTTCGGAGAATTCTTTGCAGCCATACCAGATTTAAAATAAGAATGA
258 ATCAGCTTTTTGCCAATGGGTTCGGAGAATTCTTTGCAACCATACCAGAGTTAGAATAAGAATTA
* * * *
7973 CCATCCCAATCATCGCCACCAGAATTCTCATATTATTCTTCAACCGAGTTTGTTTGTAGCTTTTG
323 CCGTCCCAGTCA-CGCCACCAGAATTCTCATATTTTTCTTCAACCGGGTTTGTTTGTAGCTTTTG
* * * * *
8038 TGGGACAT-GTGTGTTGTGGGGTCCGGATTTGGACTCATCTTCTTACTTCTTGTCATTGGAAGAA
387 TGGGA-TTGGTGTGTTTTGGGGTCCGGTTTTGGACTCATCTTCTTGCTTCTCGTCATTGGAAGAA
* * * *
8102 GAATTAGAAGACTCCTGATCCTTTTCATCTTCTCTAGAGGAAGGATGAGAATTTTCGATTAGATT
451 G-A--AGAAGACTCCTGATCCTTTTCATCTTCTCTAAAGGAAGGAAGAGGATTTTCGATTGGATT
* * *
8167 GTGATGCTTTCATGCCATGGATGAAGAGAGTTTCTAGGTTCTAGTTGATTGATGGTGGAGTGCTG
513 GGGATGCTTTCGTGCCATGGATGAAGAGAGTTTCTAGGTTCTAGTTGATTGATGGTGGAGTGGTG
* * * * *
8232 ACAGTAGAATGTATGGGAAGAGAAATTTATTTGGGAATGTGAAGGCCAACAAAATAATTAAGTTG
578 ACAGTAGAATGTATGGGAAGAGAAATTTATATGGGAATGGGAAGACCAACAGACTAATTAAGTTG
* * **
8297 TAATCATGTCTCTTTTCTTCAAATTCTCTTGGACAATTCAGAGAATTTTTATATCATGAAGCT-A
643 TAATCAAGTCTCTTTGCCCCAAATTCTCTTGGACAATTCAGAGAATTTTT-TATCATGAAGCTGA
*
8361 AAAGAATAAGTCTTTTCTGTTCTTACATCTCTTAGCAAGATTTTCATATTTTTTCTTCAACCTCA
707 AAAGAATAAGTCTTTTCTGTTCTTACATCTCTTAGCAAGATTTTCATATTTTTTCTTCAACCTCC
8426 TCACCTTGT
772 TCACCTTGT
* * * * * * * * *
8435 CCGCCAACTGTGCTCTTCTAACACTTACATGAATTGAGTCCTTGATAAAGTCATTAAAACCGTTT
1 CTGCCAGCTGAGCTCTACTAACACTAACATGAATTGAGTCCTTGATAAAGTCATAAAAATCATTC
* * * * * * * *
8500 GTATCCTTCGAATCATACTTCATCATACCTTCATGTTGAGCTATTTCATCATTCTTAGAGAAAAT
66 ATATCCTTTGAATCATACTTCAACATACCTTCAAGTAGAGCTATTTCATCATCCTCAAAGAAAAT
** * * * * *
8565 CCTCCGAAAAGGTGGCATTGCTCTTTACTGCAATCTCTTTTTCGTCAATAAGACTCTTTGCCCGT
131 CCTCCGAAAAAATGGCATTGCTCTTCACAGCAATCTCTTTTTC-TCAACAACACTCTTGGCCCGT
*
8630 TTTGATTTCTTGAGTGGTAGGTCGGATTCCCTAGCTTTCTCT-GCAGAAGTTTGAGCCTTGGAAA
195 TTTGATTTCTTGAGTGGTAGGTCGGATTCCCTAGCTCTCT-TAGCAGAAGTTTGAGCCTTGGAAA
* * * **
8694 TCAGCTTCTTGCCAATGGGTTCGGAGAATTCTTTTCAACCATACCGGAGTCT-GAATTGGAATTA
259 TCAGCTTTTTGCCAATGGGTTCGGAGAATTCTTTGCAACCATACCAGAGT-TAGAATAAGAATTA
* ** * * *
8758 CCGTCCTAGTCACCGCCATAAGAATTCT-AAACTTTTACTTCAACCGGGTTTATTTGTAGCTTTT
323 CCGTCCCAGTCA-CGCCACCAGAATTCTCATA-TTTTTCTTCAACCGGGTTTGTTTGTAGCTTTT
* * * *
8822 GTGTGATTGGTGTGTTTTGGGGTCTGATTTTGGATTCATCTTCTTGCTTCTCGTCATTGGATA-A
386 GTGGGATTGGTGTGTTTTGGGGTCCGGTTTTGGACTCATCTTCTTGCTTCTCGTCATTGGA-AGA
* * *
8886 AGAAGAAGACTCCTGATCCTTTTCATCTTCTTTAGAGGAAGGAGTATGAGGATTTTC-AGTTGGC
450 AGAAGAAGACTCCTGATCCTTTTCATCTTCTCTAAAGGAAGGA--A-GAGGATTTTCGA-TTGGA
* * * * * * *
8950 TTGGGATGTTTTCGTGGCATAGATG-AGAAGAGTTTCT-GAGTTCTAGCTGATTGATAGTTGATT
511 TTGGGATGCTTTCGTGCCATGGATGAAG-AGAGTTTCTAG-GTTCTAGTTGATTGATGGTGGAGT
* * * * *
9013 GGTGACAGTAGTATGTATGGGAGGAGAAATTCATATGGAAATGGGAAGACCAACAGACGAATTAA
574 GGTGACAGTAGAATGTATGGGAAGAGAAATTTATATGGGAATGGGAAGACCAACAGACTAATTAA
* * *
9078 GCTGTAATCAAGTCTCTTTACCCCAAATTCTCTTGG--AATT------TTTTTTTATCATGAAGC
639 GTTGTAATCAAGTCTCTTTGCCCCAAATTCTCTTGGACAATTCAGAGAATTTTTTATCATGAAGC
* * * * *
9135 TTTGAAAATAATACA-TCTTTT-TCATTCTTAGATCTCTTAGCAAGATTTTCAGATTTTTTTTTT
704 --TGAAAAGAATA-AGTCTTTTCT-GTTCTTACATCTCTTAGCAAGATTTTCATA-TTTTTTCTT
* * *
9198 CAACTTCGTCACTTTGT
764 CAACCTCCTCACCTTGT
* * * * * * *
9215 CTACCATCTGAGCACTACTTATACTAACATGAATTAAGTCCTCGATAAAGTCATAAAAATCATTC
1 CTGCCAGCTGAGCTCTACTAACACTAACATGAATTGAGTCCTTGATAAAGTCATAAAAATCATTC
* * * * *
9280 ATATCCTTTGAATAATACTTTAACATACATTCGAGTAGAGCTATTTCATCATTCTCAAAGAAAAT
66 ATATCCTTTGAATCATACTTCAACATACCTTCAAGTAGAGCTATTTCATCATCCTCAAAGAAAAT
* * * * *
9345 CCTCCGAAAAAATGGCCTTGCTTTTCATAGCAATCTCTTTTTCCTTAACGACACTCTTGGCCCGT
131 CCTCCGAAAAAATGGCATTGCTCTTCACAGCAATCTCTTTTT-CTCAACAACACTCTTGGCCCGT
* * *
9410 TTTGATTTCTTAAGTGGTAGGTCGGATTCCCTATCTCTCATAGCAGAAGTTTGAGCCTTGGAAAT
195 TTTGATTTCTTGAGTGGTAGGTCGGATTCCCTAGCTCTCTTAGCAGAAGTTTGAGCCTTGGAAAT
* * * * * *
9475 CAGCTTTTTACCAATGGGTTCGAAGAATTCTTTGCAAACATACCAGAGTCAAAATTAGAATTA
260 CAGCTTTTTGCCAATGGGTTCGGAGAATTCTTTGCAACCATACCAGAGTTAGAATAAGAATTA
9538 TATATACATT
Statistics
Matches: 2914, Mismatches: 475, Indels: 142
0.83 0.13 0.04
Matches are distributed among these distances:
776 11 0.00
777 5 0.00
778 2 0.00
779 120 0.04
780 331 0.11
781 149 0.05
782 300 0.10
783 295 0.10
784 174 0.06
785 783 0.27
786 223 0.08
787 211 0.07
788 239 0.08
789 71 0.02
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (780 bp):
CTGCCAGCTGAGCTCTACTAACACTAACATGAATTGAGTCCTTGATAAAGTCATAAAAATCATTC
ATATCCTTTGAATCATACTTCAACATACCTTCAAGTAGAGCTATTTCATCATCCTCAAAGAAAAT
CCTCCGAAAAAATGGCATTGCTCTTCACAGCAATCTCTTTTTCTCAACAACACTCTTGGCCCGTT
TTGATTTCTTGAGTGGTAGGTCGGATTCCCTAGCTCTCTTAGCAGAAGTTTGAGCCTTGGAAATC
AGCTTTTTGCCAATGGGTTCGGAGAATTCTTTGCAACCATACCAGAGTTAGAATAAGAATTACCG
TCCCAGTCACGCCACCAGAATTCTCATATTTTTCTTCAACCGGGTTTGTTTGTAGCTTTTGTGGG
ATTGGTGTGTTTTGGGGTCCGGTTTTGGACTCATCTTCTTGCTTCTCGTCATTGGAAGAAGAAGA
AGACTCCTGATCCTTTTCATCTTCTCTAAAGGAAGGAAGAGGATTTTCGATTGGATTGGGATGCT
TTCGTGCCATGGATGAAGAGAGTTTCTAGGTTCTAGTTGATTGATGGTGGAGTGGTGACAGTAGA
ATGTATGGGAAGAGAAATTTATATGGGAATGGGAAGACCAACAGACTAATTAAGTTGTAATCAAG
TCTCTTTGCCCCAAATTCTCTTGGACAATTCAGAGAATTTTTTATCATGAAGCTGAAAAGAATAA
GTCTTTTCTGTTCTTACATCTCTTAGCAAGATTTTCATATTTTTTCTTCAACCTCCTCACCTTGT
Found at i:10157 original size:23 final size:23
Alignment explanation
Indices: 10104--10160 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
10094 AAATATAATT
*
10104 AAATATTAAATATTAAAGATAAA
1 AAATATTAAAGATTAAAGATAAA
* * *
10127 AAAAATTAAAGATTTAAGATTAA
1 AAATATTAAAGATTAAAGATAAA
*
10150 GAATATTAAAG
1 AAATATTAAAG
10161 TTTTCAGTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (23 bp):
AAATATTAAAGATTAAAGATAAA
Found at i:11431 original size:68 final size:71
Alignment explanation
Indices: 11322--11525 Score: 218
Period size: 78 Copynumber: 2.8 Consensus size: 71
11312 TTCCCCTTTT
* * * * **
11322 ATATCTTCTAAATCTCCCACAATTTGGTAAGATTTAGAAAATATTCTTATTA-TTATTAAA-A-C
1 ATATCTCCTAAACCTTCCACAATTTGGCAAGATTTAGAAAATATTCTT-TTACAAATTAAATATC
11384 TA-AAAA
65 TATAAAA
*
11390 ATATCTCCTAAACCTTCCACAATTTGGCAAGATTCAGAAAATATTCTCTTTACAAATTAAATATT
1 ATATCTCCTAAACCTTCCACAATTTGGCAAGATTTAGAAAATATTCT-TTTACAAATTAAATA--
* *
11455 TTTATTTCTTAAA
63 TCTA----TAAAA
11468 ATATCTCCTAAACCTTCCACAATTTGGCAAGATTTAGAAAATATTCTTTTTACAAATT
1 ATATCTCCTAAACCTTCCACAATTTGGCAAGATTTAGAAAATATTC-TTTTACAAATT
11526 TTATTATTTT
Statistics
Matches: 114, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
68 45 0.39
69 7 0.06
70 1 0.01
73 2 0.02
78 58 0.51
79 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.39
Consensus pattern (71 bp):
ATATCTCCTAAACCTTCCACAATTTGGCAAGATTTAGAAAATATTCTTTTACAAATTAAATATCT
ATAAAA
Found at i:12696 original size:35 final size:35
Alignment explanation
Indices: 12640--12966 Score: 417
Period size: 35 Copynumber: 9.3 Consensus size: 35
12630 AACTCCTCTG
* * * * *
12640 GATCAACTCTGATCATCGGAAATTTCTTG-AAATGA
1 GATCAACTCTGATCGTTGGAAACTAC-TGAAAATGC
* * *
12675 GATCACCTCTGATTGTTGGAAACTACTGAAAATGT
1 GATCAACTCTGATCGTTGGAAACTACTGAAAATGC
*
12710 GATCAACTCTGATCGTTGGAAACCACTGAAAATGC
1 GATCAACTCTGATCGTTGGAAACTACTGAAAATGC
*
12745 GATCAACTCTGATCGTTGGAAAATACTGAAAATGC
1 GATCAACTCTGATCGTTGGAAACTACTGAAAATGC
*
12780 GATCAACTCTGATCGTTGGAAATTACTGAAAATGC
1 GATCAACTCTGATCGTTGGAAACTACTGAAAATGC
* *
12815 GATCAACTCTGATCGTTGGAAACTACTAAAAATGT
1 GATCAACTCTGATCGTTGGAAACTACTGAAAATGC
* *
12850 GATCAACTCTGATCGTTGGAAAATACTGAAAATGA
1 GATCAACTCTGATCGTTGGAAACTACTGAAAATGC
* * *
12885 GATCAACTCTGA-CCTCTGAAAAATACTGAAAATGC
1 GATCAACTCTGATCGT-TGGAAACTACTGAAAATGC
* * *
12920 GATCAACTCTGATCGTTGGAAACTTCTTG-GAATGA
1 GATCAACTCTGATCGTTGGAAACTAC-TGAAAATGC
12955 GATCAACTCTGA
1 GATCAACTCTGA
12967 CCTCTAAAAA
Statistics
Matches: 259, Mismatches: 29, Indels: 8
0.88 0.10 0.03
Matches are distributed among these distances:
34 4 0.02
35 251 0.97
36 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (35 bp):
GATCAACTCTGATCGTTGGAAACTACTGAAAATGC
Found at i:12943 original size:105 final size:105
Alignment explanation
Indices: 12640--13325 Score: 465
Period size: 105 Copynumber: 6.5 Consensus size: 105
12630 AACTCCTCTG
* * * * * * * * *
12640 GATCAACTCTGATCATCGGAAATTTCTTGAAATGAGATCACCTCTGA-TTGTTGGAAACTACTGA
1 GATCAACTCTGATCGTTGGAAAATACTTGAAATGAGATCAACTCTGACCT-CTGAAAAATACTGA
* * * *
12704 AAATGTGATCAACTCTGATCGTTGGAAACCACTGAAAATGC
65 AAATGCGATCAACTCTGATCGTTGGAAACTACTAAAAATGA
* * * *
12745 GATCAACTCTGATCGTTGGAAAATAC-TGAAAATGCGATCAACTCTGATCGT-TGGAAATTACTG
1 GATCAACTCTGATCGTTGGAAAATACTTG-AAATGAGATCAACTCTGA-CCTCTGAAAAATACTG
*
12808 AAAATGCGATCAACTCTGATCGTTGGAAACTACTAAAAATGT
64 AAAATGCGATCAACTCTGATCGTTGGAAACTACTAAAAATGA
12850 GATCAACTCTGATCGTTGGAAAATAC-TGAAAATGAGATCAACTCTGACCTCTGAAAAATACTGA
1 GATCAACTCTGATCGTTGGAAAATACTTG-AAATGAGATCAACTCTGACCTCTGAAAAATACTGA
* ***
12914 AAATGCGATCAACTCTGATCGTTGGAAACTTCTTGGAATGA
65 AAATGCGATCAACTCTGATCGTTGGAAACTACTAAAAATGA
* * * * *
12955 GATCAACTCTGA-CCTCT-AAAAACTTCTTGAAATTAGATCAACTCTGACCTCTGAAAACCT-CT
1 GATCAACTCTGATCGT-TGGAAAA-TACTTGAAATGAGATCAACTCTGACCTCTGAAAA-ATAC-
* * * * * ***
13017 TG-ATATGAGATCAACTCTGA-CCTCTGAAAACTTCTTGGAATGA
62 TGAAAATGCGATCAACTCTGATCGT-TGGAAACTACTAAAAATGA
* * * *
13060 GATCGACTCTGA-CCTCT-GAAAACTTCTTGAAATGAGATCAACTCTGACCTCT-AAAAACTTCT
1 GATCAACTCTGATCGT-TGGAAAA-TACTTGAAATGAGATCAACTCTGACCTCTGAAAAA-TAC-
* * * * * ***
13122 TG-GAATGAGATCAACTCTGA-CCTCTGAAAACTTCTTGGAATGA
62 TGAAAATGCGATCAACTCTGATCGT-TGGAAACTACTAAAAATGA
* * * * * * * *
13165 GATCAATTCTGA-CCTCT-GAAAACTTCTTGGAAGGAGATCAACTCTGACCTTTGAAAACTTCTT
1 GATCAACTCTGATCGT-TGGAAAA-TACTTGAAATGAGATCAACTCTGACCTCTGAAAAATAC-T
* * * * * **
13228 G-CAATGAGATCAACTATGA-CCTCTGAAAACTACTTTAAATGA
63 GAAAATGCGATCAACTCTGATCGT-TGGAAACTACTAAAAATGA
* ** * *
13270 GATCAACTCTGA-CCTCAGAAAACTTCTTGATATGAGATCAACTCTGACCTCTGAAA
1 GATCAACTCTGATCGTTGGAAAA-TACTTGAAATGAGATCAACTCTGACCTCTGAAA
13326 CCTTCTTGAA
Statistics
Matches: 514, Mismatches: 53, Indels: 28
0.86 0.09 0.05
Matches are distributed among these distances:
104 17 0.03
105 487 0.95
106 9 0.02
107 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (105 bp):
GATCAACTCTGATCGTTGGAAAATACTTGAAATGAGATCAACTCTGACCTCTGAAAAATACTGAA
AATGCGATCAACTCTGATCGTTGGAAACTACTAAAAATGA
Found at i:12967 original size:70 final size:69
Alignment explanation
Indices: 12640--13409 Score: 727
Period size: 70 Copynumber: 11.0 Consensus size: 69
12630 AACTCCTCTG
* * * * * * * *
12640 GATCAACTCTGATCATCGGAAATTTCTTGAAATGAGATCACCTCTGA-TTGTTGGAAACTAC-TG
1 GATCAACTCTGA-CCTTGAAAACTTCTTGAAATGAGATCAACTCTGACCT-CTGAAAACTACTTG
*
12703 AAAATGT
64 -AAATGA
* * ** * *
12710 GATCAACTCTGATCGTTGGAAACCAC-TGAAAATGCGATCAACTCTGATCGT-TGGAAAA-TAC-
1 GATCAACTCTGA-CCTTGAAAACTTCTTG-AAATGAGATCAACTCTGA-CCTCT-GAAAACTACT
*
12771 TGAAAATGC
62 TG-AAATGA
* * * * *
12780 GATCAACTCTGATCGTTGGAAA-TTAC-TGAAAATGCGATCAACTCTGATCGT-TGGAAACTACT
1 GATCAACTCTGA-CCTTGAAAACTT-CTTG-AAATGAGATCAACTCTGA-CCTCTGAAAACTACT
** *
12842 AAAAATGT
62 TGAAATGA
* * *
12850 GATCAACTCTGATCGTTGGAAAA-TAC-TGAAAATGAGATCAACTCTGACCTCTGAAAAATAC-T
1 GATCAACTCTGA-CCTT-GAAAACTTCTTG-AAATGAGATCAACTCTGACCTCTGAAAACTACTT
*
12912 GAAAATGC
63 G-AAATGA
* * * * *
12920 GATCAACTCTGATCGTTGGAAACTTCTTGGAATGAGATCAACTCTGACCTCTAAAAACTTCTTGA
1 GATCAACTCTGA-CCTTGAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAAAACTACTTGA
*
12985 AATTA
65 AATGA
* * * *
12990 GATCAACTCTGACCTCTGAAAACCTCTTGATATGAGATCAACTCTGACCTCTGAAAACTTCTTGG
1 GATCAACTCTGACCT-TGAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAAAACTACTTGA
13055 AATGA
65 AATGA
* * * *
13060 GATCGACTCTGACCTCTGAAAACTTCTTGAAATGAGATCAACTCTGACCTCTAAAAACTTCTTGG
1 GATCAACTCTGACCT-TGAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAAAACTACTTGA
13125 AATGA
65 AATGA
* * * *
13130 GATCAACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAATTCTGACCTCTGAAAACTTCTTGG
1 GATCAACTCTGACCT-TGAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAAAACTACTTGA
*
13195 AAGGA
65 AATGA
* * *
13200 GATCAACTCTGACCTTTGAAAACTTCTTGCAATGAGATCAACTATGACCTCTGAAAACTACTTTA
1 GATCAACTCTGACC-TTGAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAAAACTACTTGA
13265 AATGA
65 AATGA
* * * *
13270 GATCAACTCTGACCTCAGAAAACTTCTTGATATGAGATCAACTCTGACCTCTGAAACCTTCTTGA
1 GATCAACTCTGACCT-TGAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAAAACTACTTGA
13335 AATGA
65 AATGA
* * * *
13340 TATCAACTCTGACCTCTGAAAACTTCTTGATATGAGATCAACTCTGACCTCTGAAAACTTCTTAA
1 GATCAACTCTGACCT-TGAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAAAACTACTTGA
13405 AATGA
65 AATGA
13410 CCGCACTGGA
Statistics
Matches: 616, Mismatches: 68, Indels: 32
0.86 0.09 0.04
Matches are distributed among these distances:
69 15 0.02
70 586 0.95
71 14 0.02
72 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (69 bp):
GATCAACTCTGACCTTGAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAAAACTACTTGAA
ATGA
Found at i:12978 original size:35 final size:35
Alignment explanation
Indices: 12880--13402 Score: 741
Period size: 35 Copynumber: 14.9 Consensus size: 35
12870 AAATACTGAA
* * *
12880 AATGAGATCAACTCTGACCTCTGAAAAATAC-TGAA
1 AATGAGATCAACTCTGACCTCTGAAAACTTCTTG-G
* * *
12915 AATGCGATCAACTCTGATCGT-TGGAAACTTCTTGG
1 AATGAGATCAACTCTGA-CCTCTGAAAACTTCTTGG
* *
12950 AATGAGATCAACTCTGACCTCTAAAAACTTCTTGA
1 AATGAGATCAACTCTGACCTCTGAAAACTTCTTGG
* *
12985 AATTAGATCAACTCTGACCTCTGAAAACCTCTT-G
1 AATGAGATCAACTCTGACCTCTGAAAACTTCTTGG
13019 ATATGAGATCAACTCTGACCTCTGAAAACTTCTTGG
1 A-ATGAGATCAACTCTGACCTCTGAAAACTTCTTGG
* *
13055 AATGAGATCGACTCTGACCTCTGAAAACTTCTTGA
1 AATGAGATCAACTCTGACCTCTGAAAACTTCTTGG
*
13090 AATGAGATCAACTCTGACCTCTAAAAACTTCTTGG
1 AATGAGATCAACTCTGACCTCTGAAAACTTCTTGG
13125 AATGAGATCAACTCTGACCTCTGAAAACTTCTTGG
1 AATGAGATCAACTCTGACCTCTGAAAACTTCTTGG
*
13160 AATGAGATCAATTCTGACCTCTGAAAACTTCTTGG
1 AATGAGATCAACTCTGACCTCTGAAAACTTCTTGG
* * *
13195 AAGGAGATCAACTCTGACCTTTGAAAACTTCTTGC
1 AATGAGATCAACTCTGACCTCTGAAAACTTCTTGG
* * **
13230 AATGAGATCAACTATGACCTCTGAAAACTACTTTA
1 AATGAGATCAACTCTGACCTCTGAAAACTTCTTGG
*
13265 AATGAGATCAACTCTGACCTCAGAAAACTTCTT-G
1 AATGAGATCAACTCTGACCTCTGAAAACTTCTTGG
* *
13299 ATATGAGATCAACTCTGACCTCTGAAACCTTCTTGA
1 A-ATGAGATCAACTCTGACCTCTGAAAACTTCTTGG
*
13335 AATGATATCAACTCTGACCTCTGAAAACTTCTT-G
1 AATGAGATCAACTCTGACCTCTGAAAACTTCTTGG
13369 ATATGAGATCAACTCTGACCTCTGAAAACTTCTT
1 A-ATGAGATCAACTCTGACCTCTGAAAACTTCTT
13403 AAAATGACCG
Statistics
Matches: 435, Mismatches: 45, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
34 5 0.01
35 423 0.97
36 7 0.02
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (35 bp):
AATGAGATCAACTCTGACCTCTGAAAACTTCTTGG
Found at i:14267 original size:13 final size:12
Alignment explanation
Indices: 14240--14282 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
14230 TTTTTTTCTT
*
14240 TTTTTTTTGA-C
1 TTTTTTTTAACC
*
14251 TTTTTTTTACCC
1 TTTTTTTTAACC
*
14263 TTTTTTTAAACC
1 TTTTTTTTAACC
14275 TTTTTTTT
1 TTTTTTTT
14283 TCGTCATTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
11 8 0.31
12 18 0.69
ACGTcount: A:0.12, C:0.14, G:0.02, T:0.72
Consensus pattern (12 bp):
TTTTTTTTAACC
Found at i:19911 original size:21 final size:21
Alignment explanation
Indices: 19863--19903 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
19853 GCCTTGTTCT
19863 TGCCTCATCTCTTCTTGTGAA
1 TGCCTCATCTCTTCTTGTGAA
*
19884 TGCCTCATTTCTTCTTGTGA
1 TGCCTCATCTCTTCTTGTGA
19904 TTGTCTCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.12, C:0.27, G:0.15, T:0.46
Consensus pattern (21 bp):
TGCCTCATCTCTTCTTGTGAA
Found at i:22952 original size:15 final size:16
Alignment explanation
Indices: 22920--22955 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
22910 AAAGAAGAAT
*
22920 TAAAATTAAATCTAAC
1 TAAAAGTAAATCTAAC
22936 TAAAAGTAAAT-TAAC
1 TAAAAGTAAATCTAAC
22951 TAAAA
1 TAAAA
22956 TAGCAATCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.61, C:0.08, G:0.03, T:0.28
Consensus pattern (16 bp):
TAAAAGTAAATCTAAC
Found at i:24269 original size:19 final size:18
Alignment explanation
Indices: 24236--24271 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
24226 TTTAAACAAT
24236 TCTTCAATGATCTTCAAA
1 TCTTCAATGATCTTCAAA
*
24254 TCTTCAAATTATCTTCAA
1 TCTTC-AATGATCTTCAA
24272 GAAATCTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.33, C:0.22, G:0.03, T:0.42
Consensus pattern (18 bp):
TCTTCAATGATCTTCAAA
Found at i:24473 original size:20 final size:21
Alignment explanation
Indices: 24435--24473 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
24425 TAGAAAATAA
*
24435 GGTAAAAATGCATATAAAAGT
1 GGTAAAAATGCATAGAAAAGT
*
24456 GGTAAAAA-GTATAGAAAA
1 GGTAAAAATGCATAGAAAA
24474 ATAGCCATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.56, C:0.03, G:0.21, T:0.21
Consensus pattern (21 bp):
GGTAAAAATGCATAGAAAAGT
Found at i:25803 original size:17 final size:18
Alignment explanation
Indices: 25781--25817 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
25771 ATAAAGACAT
*
25781 AAGATAAAGGA-AAATTA
1 AAGATAAAGCATAAATTA
25798 AAGATAAAGCATAAATTA
1 AAGATAAAGCATAAATTA
25816 AA
1 AA
25818 TAACTAAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.65, C:0.03, G:0.14, T:0.19
Consensus pattern (18 bp):
AAGATAAAGCATAAATTA
Found at i:27136 original size:16 final size:16
Alignment explanation
Indices: 27115--27156 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
27105 CCTAACACAC
*
27115 TTTGCATGGCGTAGCA
1 TTTGCATGGCGCAGCA
27131 TTTGCATGGCGCAGCA
1 TTTGCATGGCGCAGCA
*
27147 CTTGCATGGC
1 TTTGCATGGC
27157 TAGGTCCGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.17, C:0.24, G:0.31, T:0.29
Consensus pattern (16 bp):
TTTGCATGGCGCAGCA
Found at i:32796 original size:15 final size:16
Alignment explanation
Indices: 32764--32799 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
32754 AAAGAAGAAT
*
32764 TAAAATTAAATCTAAC
1 TAAAAGTAAATCTAAC
32780 TAAAAGTAAAT-TAAC
1 TAAAAGTAAATCTAAC
32795 TAAAA
1 TAAAA
32800 TAGCAATCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.61, C:0.08, G:0.03, T:0.28
Consensus pattern (16 bp):
TAAAAGTAAATCTAAC
Found at i:34101 original size:19 final size:18
Alignment explanation
Indices: 34068--34103 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
34058 TTGAAATAAT
34068 TCTTCAATGATCTTCAAA
1 TCTTCAATGATCTTCAAA
*
34086 TCTTCAAATTATCTTCAA
1 TCTTC-AATGATCTTCAA
34104 GAAATCTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.33, C:0.22, G:0.03, T:0.42
Consensus pattern (18 bp):
TCTTCAATGATCTTCAAA
Found at i:35166 original size:14 final size:14
Alignment explanation
Indices: 35143--35184 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
35133 AAAGTCTAAA
*
35143 ATTATCTTTTAATT
1 ATTATTTTTTAATT
35157 ATTATTTTTT-ATT
1 ATTATTTTTTAATT
*
35170 ATTACTTTTATAATT
1 ATTA-TTTTTTAATT
35185 GAATTTTCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 7 0.29
14 14 0.58
15 3 0.12
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTATTTTTTAATT
Found at i:35346 original size:68 final size:71
Alignment explanation
Indices: 35237--35439 Score: 209
Period size: 78 Copynumber: 2.8 Consensus size: 71
35227 TTCCCTTTTT
* * ** *
35237 ATATCTTCTAAATC-TCACACAATTTGGCAAGATTTAGAAAATATTCT-TATTA-TTATTAAATC
1 ATATCTCCTAAACCTTC-CACAATTTGGCAAGATTTAGAAAATATTCTCT-TTACAAATCAAATC
35299 -TA-AAAA
64 TTATAAAA
*
35305 ATATCTCCTAAACCTTCCACAATTTGGCAAGATTCAGAAAATATTCTCTTTACAAATCAAATCTT
1 ATATCTCCTAAACCTTCCACAATTTGGCAAGATTTAGAAAATATTCTCTTTACAAATCAAATC--
*
35370 TTTATTTCTTAAA
64 -TTA----TAAAA
* *
35383 ATATCTCCTAAACCTTCCACAATTTGGCAAGATTTAGAAAATATTATTTTTACAAAT
1 ATATCTCCTAAACCTTCCACAATTTGGCAAGATTTAGAAAATATTCTCTTTACAAAT
35440 TTTATTATTA
Statistics
Matches: 113, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
68 44 0.39
69 10 0.09
73 2 0.02
78 57 0.50
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.38
Consensus pattern (71 bp):
ATATCTCCTAAACCTTCCACAATTTGGCAAGATTTAGAAAATATTCTCTTTACAAATCAAATCTT
ATAAAA
Found at i:40827 original size:61 final size:57
Alignment explanation
Indices: 40751--40885 Score: 157
Period size: 55 Copynumber: 2.3 Consensus size: 57
40741 TTACAGTTCC
* * *
40751 AAAATATCCAACAAAAACTAATAATTATCTAATGTTTAACCATAATTATAATTTACAGCTTG
1 AAAATAT-CAACAAAAA--AAGAATTA-C-AATGTTTAACAATAATTACAATTTACAGCTTG
* *
40813 AAAATATCAAC--AAAAAGAATTACAATGTTTAGCAATAATTACATTTTACAGCTTG
1 AAAATATCAACAAAAAAAGAATTACAATGTTTAACAATAATTACAATTTACAGCTTG
*
40868 GAAATATCAACAAAAAAA
1 AAAATATCAACAAAAAAA
40886 AATGATCCAC
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
55 38 0.58
56 1 0.02
57 12 0.18
59 3 0.05
61 4 0.06
62 7 0.11
ACGTcount: A:0.50, C:0.13, G:0.07, T:0.30
Consensus pattern (57 bp):
AAAATATCAACAAAAAAAGAATTACAATGTTTAACAATAATTACAATTTACAGCTTG
Done.