Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008745.1 Corchorus capsularis cultivar CVL-1 contig08766, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 928

Length: 1548
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:1247 original size:20 final size:20

Alignment explanation


    Indices: 1222--1262  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1212 AGACTAGCTC

                                
       1222 AGTTCACTAGGCAACAATAA
          1 AGTTCACTAGGCAACAATAA

                                
       1242 AGTTCACTAGGCAACAATAA
          1 AGTTCACTAGGCAACAATAA

             
       1262 A
          1 A

       1263 CAGAAGAAAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.46, C:0.20, G:0.15, T:0.20


Consensus pattern (20 bp):   
AGTTCACTAGGCAACAATAA
Done.