Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008751.1 Corchorus capsularis cultivar CVL-1 contig08772, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41439

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
239--283
21
2.1
21
92
8
74
35
11
33
20
1.88
508--536
7
4.1
7
100
0
58
13
0
41
44
1.44
7190--7270
32
2.5
32
84
4
101
16
6
34
43
1.72
7407--7502
16
6.0
16
78
0
93
6
11
31
51
1.63
7407--7496
32
2.8
32
91
0
144
5
11
31
52
1.60
7566--7595
16
1.9
15
93
6
51
3
13
33
50
1.58
14348--14388
7
5.9
7
86
13
50
58
4
0
36
1.20
14329--14386
25
2.2
25
81
9
62
53
6
1
37
1.38
14570--14594
13
1.9
13
100
0
50
40
20
8
32
1.81
20074--20171
51
1.9
51
100
0
196
45
8
11
34
1.69
23058--23156
52
1.9
52
85
4
137
25
25
23
26
2.00
32047--32352
167
1.8
167
82
2
391
29
22
20
28
1.98
31952--32658
160
4.4
161
77
7
600
27
22
20
28
1.99
35330--35407
23
3.4
24
68
18
76
30
16
5
47
1.68
35321--35410
45
2.0
45
100
0
180
31
17
4
46
1.68
36125--36182
9
6.9
9
71
13
52
51
17
3
27
1.61
36199--36232
17
2.0
17
88
0
50
26
17
23
32
1.97
36698--36748
17
3.1
16
76
18
50
35
21
19
23
1.96
38591--38627
1
37.0
1
91
0
56
94
0
2
2
0.36

Tables:   1

The End!