Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008753.1 Corchorus capsularis cultivar CVL-1 contig08774, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45737

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6157--6181
2
12.5
2
100
0
50
52
0
48
0
1.00
9799--9837
21
1.9
19
85
10
51
7
17
7
66
1.40
10127--10233
33
3.3
32
80
8
110
17
34
33
14
1.90
10320--10404
32
2.7
32
88
3
118
17
35
35
11
1.87
10395--10457
33
1.9
33
86
0
90
12
33
38
15
1.86
10726--10832
55
1.9
55
88
0
160
28
8
15
46
1.75
11872--11931
31
1.9
31
96
0
111
51
11
16
20
1.75
14385--14427
22
2.0
22
90
0
68
39
27
0
32
1.57
15301--15349
24
2.0
24
92
0
80
42
10
8
38
1.68
18741--18822
32
2.6
31
86
11
114
21
8
10
58
1.59
18741--18822
31
2.6
30
88
9
112
21
8
10
58
1.59
23521--23755
118
2.0
118
94
0
416
37
20
17
24
1.93
23810--24285
30
15.7
30
84
4
456
32
17
16
33
1.92
23810--24315
60
8.3
60
88
2
575
32
17
16
33
1.93
28094--28171
12
6.2
12
69
14
59
47
12
19
20
1.82
28402--28506
16
6.6
16
72
12
72
33
34
20
11
1.89
29359--29403
15
2.9
16
76
6
56
31
35
24
8
1.86
32569--32608
19
2.2
18
86
4
53
30
20
5
45
1.72
38497--38559
3
20.3
3
77
6
54
33
6
3
57
1.40
38769--38796
12
2.3
12
100
0
56
0
21
0
78
0.75
41348--41427
41
1.9
41
87
7
117
41
7
11
40
1.69
41348--41494
50
3.3
41
75
18
125
40
6
12
41
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41389--41487
50
2.0
50
89
0
153
40
5
11
43
1.62
44297--44361
1
65.0
1
78
0
67
89
10
0
0
0.49
44295--44365
7
10.7
7
81
17
89
87
12
0
0
0.55
44295--44365
27
2.7
26
89
8
108
87
12
0
0
0.55
44295--44358
32
2.0
32
93
3
112
87
12
0
0
0.54
44406--44438
2
17.0
2
93
6
59
51
0
0
48
1.00
44442--44493
27
1.9
27
92
0
86
40
25
13
21
1.89
44541--44664
29
4.3
29
78
9
128
34
25
14
25
1.94
44745--44917
90
1.9
88
90
4
276
27
22
19
31
1.98

Tables:   1

The End!