Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008768.1 Corchorus capsularis cultivar CVL-1 contig08789, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82656

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2115--2375
131
2.0
131
91
5
422
18
12
14
55
1.69
2126--2375
129
1.9
129
89
6
380
17
12
14
56
1.67
5863--5920
30
1.9
30
92
0
98
25
24
12
37
1.90
7254--7329
31
2.5
31
84
0
98
32
13
19
34
1.90
8505--8666
60
2.7
59
85
5
220
35
19
19
25
1.95
8501--8695
31
6.4
32
71
14
121
35
17
19
27
1.94
8726--8890
31
5.5
31
72
11
162
27
20
19
33
1.96
8757--8858
29
3.4
29
74
10
98
28
20
19
31
1.97
8725--8889
60
2.8
60
93
0
285
26
20
19
33
1.97
21731--21775
21
2.1
21
91
0
72
26
6
57
8
1.54
23690--23752
24
2.7
24
73
11
67
31
12
4
50
1.61
23825--23849
11
2.3
11
100
0
50
92
0
8
0
0.40
24507--24547
2
20.0
2
85
14
57
48
4
0
46
1.23
25894--25923
7
4.3
7
95
0
51
0
53
43
3
1.17
28053--28111
31
1.9
31
92
0
100
33
16
3
45
1.64
28500--28525
12
2.2
12
100
0
52
53
15
23
7
1.67
29266--29323
3
19.3
3
100
0
116
32
0
0
67
0.91
31482--31572
47
1.9
47
84
4
121
43
12
3
40
1.58
34243--34307
30
2.1
32
86
11
91
1
50
3
44
1.26
35924--35982
27
2.2
28
81
9
77
27
28
15
28
1.96
35970--36050
27
3.3
26
65
28
70
35
32
12
19
1.89
35952--36051
45
2.2
45
96
0
182
34
31
14
21
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42397--42441
19
2.2
20
92
7
74
28
2
0
68
1.01
42406--42441
16
2.2
16
95
0
63
27
2
0
69
1.02
55635--55682
24
2.0
24
100
0
96
50
16
4
29
1.64
72800--72854
26
2.1
26
100
0
110
40
7
25
27
1.82
74268--74477
69
3.0
69
80
2
233
22
24
16
35
1.95
76297--76447
75
2.0
75
92
0
248
45
7
8
38
1.64
79516--79554
16
2.4
16
100
0
78
48
5
17
28
1.68

Tables:   1

The End!