Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008769.1 Corchorus capsularis cultivar CVL-1 contig08790, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2541
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39


Found at i:716 original size:21 final size:21

Alignment explanation


    Indices: 690--735  Score: 74
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        680 CTATGTTATT

                       **        
        690 TTAGATCACATTGATCATTCA
          1 TTAGATCACATAAATCATTCA

                                 
        711 TTAGATCACATAAATCATTCA
          1 TTAGATCACATAAATCATTCA

                
        732 TTAG
          1 TTAG

        736 TTTGGTAGAG


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37


Consensus pattern (21 bp):   
TTAGATCACATAAATCATTCA
Done.