Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008775.1 Corchorus capsularis cultivar CVL-1 contig08796, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88874

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
359--425
31
2.1
32
83
10
93
47
4
16
31
1.66
366--431
31
2.1
31
88
5
98
48
4
19
27
1.68
460--503
2
21.5
2
86
4
61
47
0
6
45
1.29
2041--2099
29
2.0
30
83
9
77
32
15
23
28
1.95
5579--5605
7
3.9
7
100
0
54
14
0
44
40
1.46
10936--11133
100
2.0
100
100
0
396
33
15
16
34
1.90
14703--14736
15
2.3
15
100
0
68
61
5
5
26
1.42
14721--14805
42
2.0
42
100
0
170
55
4
14
25
1.58
14983--15036
28
2.1
24
80
19
56
3
40
3
51
1.37
15007--15048
22
1.9
22
90
0
66
4
42
2
50
1.36
15007--15061
22
2.6
21
77
11
58
3
43
1
50
1.30
28182--28219
2
19.5
2
83
5
51
44
0
0
55
0.99
28476--28790
165
1.9
166
88
3
483
37
15
17
29
1.91
42422--42520
49
2.0
49
94
0
171
46
21
14
18
1.83
43155--43202
23
2.1
23
100
0
96
29
29
8
33
1.86
45741--45778
13
2.8
14
85
14
53
28
15
2
52
1.56
54924--54964
20
2.0
20
95
0
73
26
21
4
46
1.72
54958--55019
31
2.0
31
93
0
106
11
16
14
58
1.64
57181--57459
21
13.0
21
73
14
137
20
21
3
55
1.57
57181--57230
14
3.6
14
83
0
73
18
22
4
56
1.58
57191--57274
7
11.7
7
73
7
53
19
19
1
60
1.42
57165--57241
28
2.8
28
83
0
109
16
19
2
61
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57170--57241
14
5.1
14
71
18
51
16
18
2
62
1.44
57183--57258
14
5.8
13
73
14
52
19
18
2
59
1.50
57239--57489
22
11.8
22
75
11
202
20
21
3
55
1.57
57418--57464
19
2.3
21
89
7
71
19
17
4
59
1.53
57170--57502
40
7.9
40
70
16
124
19
20
3
56
1.55
57373--57470
20
5.2
19
72
17
57
22
19
3
55
1.57
57480--57517
19
2.0
19
85
10
51
15
18
2
63
1.43
57431--57610
35
4.7
40
78
14
125
18
22
1
57
1.49
57521--57620
35
2.9
35
95
0
173
20
25
1
54
1.51
57653--57683
6
5.0
6
92
7
53
35
16
0
48
1.46
57653--57683
13
2.5
12
94
5
53
35
16
0
48
1.46
57653--57696
20
2.2
20
92
4
72
34
15
0
50
1.45
57666--57762
42
2.3
44
78
8
121
24
19
2
53
1.56
57783--57851
30
2.3
30
82
0
84
24
18
10
46
1.80
57834--57900
36
1.9
34
85
11
91
22
19
7
50
1.72
61237--61330
27
3.4
27
86
1
116
45
26
12
14
1.81
69563--69592
15
2.1
14
93
6
51
13
23
36
26
1.92

Tables:   1

The End!