Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008776.1 Corchorus capsularis cultivar CVL-1 contig08797, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12521

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--45
2
22.5
2
95
0
81
48
2
0
48
1.13
36--72
19
1.9
19
100
0
74
37
13
0
48
1.43
403--1069
22
30.7
22
71
11
258
34
15
10
40
1.80
716--795
23
3.5
23
77
3
90
40
11
6
42
1.66
694--795
45
2.3
46
82
3
118
39
11
8
40
1.73
482--1069
44
13.5
42
70
14
288
34
15
10
39
1.82
825--1027
88
2.3
88
98
1
390
32
14
10
42
1.79
1018--1069
20
2.6
20
96
0
95
26
17
11
44
1.83
1150--1378
22
10.3
22
70
10
117
34
13
9
43
1.75
1428--1785
22
16.5
22
69
15
112
37
16
8
36
1.80
1603--1786
22
8.3
22
75
7
147
40
16
8
34
1.80
2064--2132
31
2.2
32
82
15
90
46
4
14
34
1.64
2072--2137
31
2.1
31
89
10
100
46
3
18
31
1.64
2221--2422
75
2.7
73
83
6
233
19
24
14
40
1.90
2794--2925
70
1.9
71
87
4
196
25
13
13
47
1.79
3871--3903
12
2.6
13
85
9
50
12
0
18
69
1.18
4837--4897
29
2.1
29
87
6
88
37
36
11
14
1.83
9282--9401
45
2.9
42
87
8
165
32
15
7
45
1.74
11674--11749
33
2.3
33
86
4
91
23
43
25
7
1.80

Tables:   1

The End!