Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008778.1 Corchorus capsularis cultivar CVL-1 contig08799, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2285
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.34


Found at i:2003 original size:33 final size:33

Alignment explanation


    Indices: 1966--2070  Score: 183
    Period size: 33  Copynumber: 3.2  Consensus size: 33

       1956 CTAATTGTGA

                     *                       
       1966 TGAAAACAAATCTGTTTTGGTTGATCATAGCAT
          1 TGAAAACAATTCTGTTTTGGTTGATCATAGCAT

                   *   *                     
       1999 TGAAAACTATTTTGTTTTGGTTGATCATAGCAT
          1 TGAAAACAATTCTGTTTTGGTTGATCATAGCAT

                                             
       2032 TGAAAACAATTCTGTTTTGGTTGATCATAGCAT
          1 TGAAAACAATTCTGTTTTGGTTGATCATAGCAT

                  
       2065 TGAAAA
          1 TGAAAA

       2071 TAGGACTATT


Statistics
Matches: 67,  Mismatches: 5, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  33   67  1.00

ACGTcount: A:0.32, C:0.10, G:0.18, T:0.39


Consensus pattern (33 bp):   
TGAAAACAATTCTGTTTTGGTTGATCATAGCAT

Done.