Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008779.1 Corchorus capsularis cultivar CVL-1 contig08800, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20915
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:796 original size:30 final size:30

Alignment explanation


    Indices: 750--806  Score: 89
    Period size: 30  Copynumber: 1.9  Consensus size: 30

        740 CAAGTCGATA

                                          
        750 ATAAGTCCTTGGCGCATAATTCCCTCCATG
          1 ATAAGTCCTTGGCGCATAATTCCCTCCATG

                              *         
        780 ATAA-TCCTTGGGCGCATCATTCCCTCC
          1 ATAAGTCCTT-GGCGCATAATTCCCTCC

        807 CCCTTGAAGA


Statistics
Matches: 25,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  29    5  0.20
  30   20  0.80

ACGTcount: A:0.21, C:0.33, G:0.16, T:0.30


Consensus pattern (30 bp):   
ATAAGTCCTTGGCGCATAATTCCCTCCATG

Found at i:14300 original size:2 final size:2

Alignment explanation


    Indices: 14293--14324  Score: 64
    Period size: 2  Copynumber: 16.0  Consensus size: 2

      14283 TGGTAAACAT

                                                           
      14293 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
          1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC

      14325 TATTGTGAGG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00


Consensus pattern (2 bp):   
AC

Done.