Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008789.1 Corchorus capsularis cultivar CVL-1 contig08810, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100898

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
131--203
26
3.0
25
79
18
82
42
8
9
39
1.67
221--341
41
2.9
39
76
15
118
33
7
15
42
1.75
463--520
21
2.8
21
87
10
91
41
12
22
24
1.87
534--687
43
3.6
43
77
9
125
33
8
18
39
1.81
110--667
22
25.7
22
68
14
171
36
9
16
37
1.81
865--914
22
2.3
22
92
0
82
40
2
12
46
1.52
18641--18696
13
3.9
14
76
15
60
33
5
7
53
1.51
18684--18742
22
2.6
23
86
5
93
42
5
5
47
1.47
18684--18790
23
4.4
23
75
15
99
38
5
6
49
1.52
20052--20104
2
26.5
2
100
0
106
49
0
0
50
1.00
20823--20885
18
3.5
19
75
16
53
42
4
1
50
1.32
21410--21460
19
2.7
19
93
0
84
37
5
21
35
1.78
21843--21867
2
12.5
2
100
0
50
0
0
48
52
1.00
22034--22099
23
2.9
23
90
0
87
22
21
27
28
1.99
23303--23340
19
2.1
18
90
5
58
47
2
21
28
1.64
25465--25511
19
2.5
19
100
0
94
19
14
21
44
1.86
28812--28837
2
13.0
2
100
0
52
50
0
0
50
1.00
29326--29372
20
2.1
22
77
18
53
40
8
6
44
1.60
29470--29498
10
2.9
10
100
0
58
48
41
10
0
1.37
29574--29684
39
2.8
40
82
2
145
45
28
10
15
1.80
32059--32279
122
1.8
122
90
0
361
50
1
9
38
1.43
36447--36474
6
4.7
6
100
0
56
0
14
0
85
0.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38697--38738
3
14.0
3
100
0
84
66
0
0
33
0.92
47657--47687
2
16.0
2
93
6
55
51
0
0
48
1.00
47813--47856
22
2.0
22
95
0
79
40
6
4
47
1.50
48201--48284
40
2.1
40
85
10
111
51
5
1
41
1.34
52721--52758
2
20.5
2
84
15
55
50
0
0
50
1.00
53853--53877
13
1.9
13
100
0
50
44
0
16
40
1.47
54071--54129
30
1.9
31
93
6
102
13
27
27
32
1.94
55311--55349
18
2.2
18
95
0
69
23
12
12
51
1.74
62072--62129
29
2.0
29
93
0
98
20
17
17
44
1.86
84697--84724
1
28.0
1
100
0
56
0
0
0
100
0.00
94179--94224
22
2.1
22
100
0
92
43
21
8
26
1.81

Tables:   1

The End!