Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008795.1 Corchorus capsularis cultivar CVL-1 contig08816, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23600

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
135--175
22
1.9
21
85
5
55
34
12
2
51
1.52
307--411
22
4.7
22
80
6
79
36
13
12
38
1.82
331--625
22
13.6
22
69
11
146
35
15
9
39
1.80
177--625
44
10.3
44
71
11
219
36
15
10
37
1.82
331--630
66
4.6
65
73
12
240
35
16
9
39
1.80
591--663
19
3.6
20
87
7
94
28
17
10
42
1.83
591--709
19
5.8
20
74
12
82
32
18
8
40
1.81
725--867
44
3.3
43
71
13
121
32
13
8
45
1.73
749--852
22
4.7
22
78
7
95
34
14
7
43
1.74
875--939
25
2.8
23
81
11
71
33
16
9
40
1.81
724--948
22
10.3
22
70
16
85
33
15
8
42
1.78
998--1052
22
2.5
23
82
11
71
38
16
5
40
1.72
1013--1063
22
2.3
22
82
0
66
41
19
7
31
1.80
1170--1227
22
2.5
24
80
5
75
37
18
10
32
1.85
1170--1301
22
6.0
21
71
8
66
36
17
10
35
1.84
1799--1857
31
1.9
31
93
6
102
47
5
20
27
1.71
2449--2493
2
22.0
2
95
4
81
48
2
0
48
1.13
9901--9950
25
2.0
25
96
0
91
44
8
22
26
1.80
10282--10316
9
3.7
9
85
14
52
62
0
0
37
0.95
18578--18617
5
7.8
5
86
5
53
67
0
32
0
0.91
18572--18617
15
2.9
16
83
6
58
67
2
30
0
1.03
20289--20371
40
2.1
40
97
0
157
49
2
10
37
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22578--22616
2
20.0
2
94
5
71
51
0
0
48
1.00
22961--23277
78
4.2
78
93
4
499
36
13
0
49
1.47
23366--23526
60
2.7
60
89
1
234
36
18
19
26
1.95
23418--23507
29
3.0
30
69
11
85
32
21
20
26
1.97
23426--23526
31
3.3
31
72
10
109
35
20
19
23
1.96

Tables:   1

The End!