Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000880.1 Corchorus capsularis cultivar CVL-1 contig00880, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1013
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34


Found at i:183 original size:20 final size:20

Alignment explanation


    Indices: 158--198  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        148 TGTTTTGGTT

                                
        158 TAAGTTAAAAGAATGTTTGG
          1 TAAGTTAAAAGAATGTTTGG

                                
        178 TAAGTTAAAAGAATGTTTGG
          1 TAAGTTAAAAGAATGTTTGG

             
        198 T
          1 T

        199 TTGAATTAAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.39, C:0.00, G:0.24, T:0.37


Consensus pattern (20 bp):   
TAAGTTAAAAGAATGTTTGG
Done.