Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008800.1 Corchorus capsularis cultivar CVL-1 contig08821, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2414
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:1494 original size:27 final size:28

Alignment explanation


    Indices: 1463--1538  Score: 118
    Period size: 28  Copynumber: 2.8  Consensus size: 28

       1453 AAAATGGACT

                                  *     
       1463 AAAAATGACCAAAATGCCCCTTTAATGC
          1 AAAAATGACCAAAATGCCCCTTGAATGC

                           *            
       1491 AAAAATGACCAAAATACCCCTTGAATG-
          1 AAAAATGACCAAAATGCCCCTTGAATGC

            *                    
       1518 TAAAATGACCAAAATGCCCCT
          1 AAAAATGACCAAAATGCCCCT

       1539 GGATGACCTT


Statistics
Matches: 44,  Mismatches: 4, Indels: 1
        0.90            0.08        0.02

Matches are distributed among these distances:
  27   19  0.43
  28   25  0.57

ACGTcount: A:0.45, C:0.25, G:0.11, T:0.20


Consensus pattern (28 bp):   
AAAAATGACCAAAATGCCCCTTGAATGC

Done.