Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008807.1 Corchorus capsularis cultivar CVL-1 contig08828, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15821

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26--57
2
16.0
2
100
0
64
50
0
0
50
1.00
1045--1076
2
16.5
2
93
6
57
53
0
0
46
1.00
3947--4000
18
2.7
19
77
11
56
64
0
3
31
1.11
7100--7135
2
18.0
2
100
0
72
50
0
0
50
1.00
7419--7461
21
2.0
21
100
0
86
18
13
20
46
1.83
7824--7850
2
13.5
2
100
0
54
48
0
0
51
1.00
9272--9321
23
2.1
24
85
3
66
54
12
8
26
1.64
13662--13702
20
2.0
20
90
4
64
60
2
0
36
1.10
13698--13766
36
1.9
35
82
8
86
50
4
5
39
1.46
15273--15315
12
3.6
12
77
0
50
39
0
44
16
1.48
15435--15819
139
2.7
139
98
1
743
36
22
11
29
1.89

Tables:   1

The End!