Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008810.1 Corchorus capsularis cultivar CVL-1 contig08831, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15164

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2688--2849
70
2.3
71
72
5
157
47
7
20
24
1.76
2688--2916
71
3.2
70
72
8
178
44
9
21
24
1.82
2931--3081
40
3.8
40
84
0
185
50
10
13
25
1.73
3108--3159
24
2.2
24
82
6
61
44
5
21
28
1.75
3132--4343
35
33.5
35
83
10
1070
46
7
20
25
1.77
3167--3288
59
2.1
59
89
3
183
44
6
20
28
1.76
3081--3526
94
4.6
94
86
8
569
45
7
19
26
1.77
3261--3452
59
3.1
59
79
15
240
46
7
19
26
1.76
3296--3346
24
2.1
24
89
7
77
47
5
19
27
1.73
3320--4331
75
13.6
72
85
8
1049
46
7
20
25
1.77
3320--4343
113
9.2
112
84
9
1153
46
7
20
25
1.77
4382--4487
32
3.2
33
83
13
148
43
5
21
29
1.75
6397--6562
82
2.0
82
97
0
314
46
16
10
25
1.79
6663--6702
20
2.0
20
100
0
80
45
20
15
20
1.86
7529--7560
6
5.5
6
92
7
57
34
15
0
50
1.45
11844--11875
14
2.3
14
94
0
55
37
0
12
50
1.41
13378--13417
2
20.0
2
89
0
62
45
0
0
55
0.99
14153--14197
20
2.2
20
96
0
81
15
44
0
40
1.47
14474--14769
145
2.0
144
95
0
529
44
14
10
30
1.79
14990--15040
23
2.1
23
89
7
75
52
7
1
37
1.42
14992--15040
6
8.5
6
86
10
59
53
8
2
36
1.43

Tables:   1

The End!