genome.fa.s8812.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008812.1 Corchorus capsularis cultivar CVL-1 contig08833, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21019

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290--840	205	2.7	202	89	3	829	27	18	18	35	1.94
2343--2699	156	2.3	156	79	6	366	29	17	19	33	1.95
3059--3096	17	2.2	18	90	4	60	23	34	13	28	1.92
6204--6278	29	2.6	29	89	8	109	14	10	29	45	1.79
9062--9114	26	2.0	28	81	7	65	20	3	22	52	1.62
9772--9964	54	3.6	54	83	7	257	52	5	16	25	1.65
9759--9964	108	1.9	109	93	1	360	52	5	16	25	1.65
9766--9964	109	1.8	106	93	1	317	52	5	16	25	1.64
10201--10538	43	7.7	42	77	12	274	56	6	19	18	1.62
10262--10494	7	32.7	7	64	10	53	57	5	19	18	1.60
10189--10572	21	17.6	21	71	16	205	55	6	19	19	1.64
10262--10314	27	2.0	27	85	7	72	58	1	18	20	1.49
12136--12189	27	2.0	27	100	0	108	33	25	0	40	1.56
15785--15930	49	3.0	49	87	0	211	42	23	21	12	1.87
15888--16463	41	13.9	39	73	14	335	38	20	25	14	1.91
15889--16468	82	7.0	82	74	12	399	38	20	26	14	1.92
15893--16461	129	4.6	123	77	10	369	38	20	26	14	1.92
15896--16217	170	1.9	170	81	3	398	36	21	27	14	1.92
16272--16465	39	4.9	39	77	8	151	39	20	25	15	1.91
16272--16465	80	2.4	79	81	7	223	39	20	25	15	1.91
16389--16676	46	6.3	45	71	15	184	36	20	27	15	1.93
17392--17967	51	11.3	51	87	5	611	37	16	6	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17919--17997	30	2.6	28	71	15	68	37	15	3	43	1.65
20678--20759	24	3.4	24	77	3	85	37	7	36	18	1.79

Tables:   1

The End!