Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008814.1 Corchorus capsularis cultivar CVL-1 contig08835, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49009

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2441--2474
8
4.1
8
85
7
50
58
14
2
23
1.50
2548--2577
5
5.8
5
92
7
51
80
0
0
20
0.72
3951--4055
33
3.2
32
81
5
129
24
9
20
45
1.80
4078--4189
33
3.4
33
94
0
188
27
9
18
43
1.82
4687--4731
21
2.1
21
87
0
63
26
17
26
28
1.98
6239--6308
30
2.3
31
85
7
99
50
7
17
25
1.71
6300--6499
22
9.5
22
73
10
116
54
4
20
21
1.62
6322--6593
20
13.1
21
71
15
92
52
4
20
21
1.64
6300--6925
42
15.0
42
70
17
244
53
3
21
21
1.61
6488--6531
19
2.2
20
96
4
81
47
0
20
31
1.50
6507--6561
14
4.1
14
76
6
51
45
5
23
25
1.74
6626--6724
40
2.5
40
86
6
130
54
3
25
17
1.57
6654--6919
20
12.7
21
74
13
155
54
3
20
20
1.59
6712--6960
14
18.3
13
68
18
82
54
3
20
21
1.60
6801--6967
7
23.7
7
71
8
88
57
2
20
19
1.52
6890--6960
27
2.6
27
89
8
108
59
2
21
16
1.50
6887--6977
21
4.4
21
77
2
85
58
2
20
18
1.50
6801--6967
14
11.9
14
72
11
117
57
2
20
19
1.52
6801--6988
14
13.4
14
72
9
80
57
2
19
20
1.50
6875--7059
21
8.9
21
68
10
76
56
2
22
18
1.52
7111--7137
14
1.9
14
100
0
54
51
7
18
22
1.70
19524--19576
20
2.4
24
69
21
60
22
7
7
62
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26214--26265
10
4.9
10
73
13
50
5
23
48
23
1.72
26215--26355
33
4.3
32
85
3
147
9
26
42
21
1.83
32089--32140
10
4.9
10
73
13
50
5
23
48
23
1.72
32090--32230
33
4.3
32
87
3
174
9
26
43
19
1.81
38183--38310
37
3.4
36
81
11
125
50
10
15
23
1.74
38285--38476
36
5.5
35
76
9
178
45
9
18
26
1.80
38348--38498
36
4.3
36
83
4
173
43
9
21
25
1.83
38348--38498
70
2.1
71
91
1
241
43
9
21
25
1.83
38592--38832
71
3.4
71
96
2
439
49
10
11
28
1.73
38592--38832
36
6.8
36
97
1
434
49
10
11
28
1.73
38592--38832
107
2.3
107
97
0
448
49
10
11
28
1.73
38891--38947
11
5.2
11
81
8
71
56
10
24
8
1.61
38900--38942
23
1.9
22
95
4
77
55
11
23
9
1.64
38938--39237
36
8.3
36
85
6
376
45
8
20
26
1.79
38938--39237
71
4.1
71
86
5
381
45
8
20
26
1.79
39310--39397
36
2.4
36
85
7
108
45
10
17
27
1.80
41021--41280
129
2.0
129
95
0
466
30
19
19
30
1.97
44381--44497
33
3.6
32
82
6
103
9
27
42
20
1.83
44442--44525
33
2.5
33
88
0
114
13
29
35
21
1.91
44864--44904
20
2.0
20
100
0
82
34
24
14
26
1.94
45052--45093
11
3.7
11
83
3
57
85
4
9
0
0.72
45054--45097
18
2.4
18
85
7
63
84
4
11
0
0.77

Tables:   1

The End!