genome.fa.s8815.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008815.1 Corchorus capsularis cultivar CVL-1 contig08836, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61479

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4657--4769	38	3.0	37	84	1	136	31	22	18	27	1.97
4778--4998	43	5.0	43	92	1	334	25	24	20	28	1.99
4782--4998	87	2.5	88	90	3	350	25	24	20	29	1.99
5139--5262	10	11.1	12	62	23	56	23	41	24	11	1.87
5151--5262	33	3.4	33	86	2	154	23	41	24	10	1.85
9235--9298	33	1.9	33	87	0	92	20	39	29	10	1.87
15759--15855	33	2.9	33	92	0	149	19	38	29	12	1.88
15759--15899	33	4.3	32	84	7	133	21	41	26	10	1.86
19294--19402	33	3.3	32	78	10	121	23	39	24	11	1.89
22678--22706	15	1.9	15	100	0	58	34	6	20	37	1.80
27221--27254	1	34.0	1	100	0	68	100	0	0	0	0.00
28129--28154	1	26.0	1	100	0	52	100	0	0	0	0.00
30627--30703	29	2.6	28	86	8	109	41	18	23	16	1.90
34706--34752	22	2.1	22	96	0	85	42	4	6	46	1.48
34706--34748	11	3.9	11	90	0	68	41	4	6	46	1.51
34967--35008	11	3.8	11	78	12	50	45	4	4	45	1.45
34967--35013	22	2.1	22	92	0	76	44	4	6	44	1.49
34625--35149	261	2.0	260	97	1	989	39	7	19	34	1.80
37313--37396	33	2.5	33	92	0	132	10	22	44	22	1.84
38142--38226	33	2.6	33	96	0	152	42	14	17	25	1.87
38142--38246	33	3.2	33	87	2	104	40	16	17	25	1.89
43477--43600	33	3.7	33	78	8	135	24	40	26	8	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47122--47147	2	13.0	2	100	0	52	50	0	0	50	1.00
51069--51142	33	2.2	34	78	7	89	12	28	40	18	1.87
51093--51176	33	2.5	33	88	3	125	9	30	38	21	1.85
55765--55799	9	3.8	9	88	3	52	14	0	2	82	0.77
56836--56908	33	2.2	34	80	7	87	12	27	39	20	1.88
56859--56942	33	2.5	33	86	3	107	11	29	35	22	1.90
57099--57174	33	2.3	32	82	10	91	7	26	42	23	1.81
57111--57196	33	2.6	33	79	0	82	10	29	36	24	1.89
56836--57315	263	1.8	263	89	1	757	15	30	28	25	1.96

Tables:   1

The End!