Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008816.1 Corchorus capsularis cultivar CVL-1 contig08837, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10170
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35


Found at i:2938 original size:88 final size:88

Alignment explanation


    Indices: 2789--2965  Score: 302
    Period size: 88  Copynumber: 2.0  Consensus size: 88

       2779 CTTTTACTCT

                                             *            *                  
       2789 ATTATCTTCCGCAGTTCATAAAGATTGCTCTTATCACATCATGGCATGCCTGACCTTGCGGGCCG
          1 ATTATCTTCCGCAGTTCATAAAGATTGCTCTTAACACATCATGGCACGCCTGACCTTGCGGGCCG

                                   
       2854 ATCTTGGGACAAAGAAGGAGAAG
         66 ATCTTGGGACAAAGAAGGAGAAG

                                                              *              
       2877 ATTATCTTCCGCAGTTCAT-AAGAATTGCTCTTAACACATCATGGCACGCTTGACCTTGCGGGCC
          1 ATTATCTTCCGCAGTTCATAAAG-ATTGCTCTTAACACATCATGGCACGCCTGACCTTGCGGGCC

                            *       
       2941 GATCTTGGGACAAAGAGGGAGAAG
         65 GATCTTGGGACAAAGAAGGAGAAG

             
       2965 A
          1 A

       2966 CTTAGCTGGG


Statistics
Matches: 84,  Mismatches: 4, Indels: 2
        0.93            0.04        0.02

Matches are distributed among these distances:
  87    3  0.04
  88   81  0.96

ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25


Consensus pattern (88 bp):   
ATTATCTTCCGCAGTTCATAAAGATTGCTCTTAACACATCATGGCACGCCTGACCTTGCGGGCCG
ATCTTGGGACAAAGAAGGAGAAG
Done.