Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008819.1 Corchorus capsularis cultivar CVL-1 contig08840, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 639

Length: 1065
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28


Found at i:318 original size:13 final size:13

Alignment explanation


    Indices: 300--334  Score: 61
    Period size: 13  Copynumber: 2.7  Consensus size: 13

        290 AATCTAAATC

                   *     
        300 TAAAGCAGATTAA
          1 TAAAGCAAATTAA

                         
        313 TAAAGCAAATTAA
          1 TAAAGCAAATTAA

                     
        326 TAAAGCAAA
          1 TAAAGCAAA

        335 CAATAATTAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  13   21  1.00

ACGTcount: A:0.60, C:0.09, G:0.11, T:0.20


Consensus pattern (13 bp):   
TAAAGCAAATTAA
Done.