Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008822.1 Corchorus capsularis cultivar CVL-1 contig08843, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20367
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29


Found at i:2048 original size:46 final size:46

Alignment explanation


    Indices: 1987--2090  Score: 122
    Period size: 46  Copynumber: 2.3  Consensus size: 46

       1977 ATAATTGAGG

                 *    *                 *   *               
       1987 CCATTTCTTTCTTTTTCTTTTTTCTTT-TTTCCAAG-TTACATGAGCC
          1 CCATTGCTTTGTTTTT-TTTTTT-TTTGGTTCAAAGTTTACATGAGCC

                                                 * *      
       2033 CCATTGCTTTGTTTTTTTTTTTTTTGGTTCAAAGTTTTCTTGAGCC
          1 CCATTGCTTTGTTTTTTTTTTTTTTGGTTCAAAGTTTACATGAGCC

                        
       2079 CCATTGCTTTGT
          1 CCATTGCTTTGT

       2091 CAAACACTAA


Statistics
Matches: 50,  Mismatches: 6, Indels: 4
        0.83            0.10        0.07

Matches are distributed among these distances:
  44    3  0.06
  45   12  0.24
  46   35  0.70

ACGTcount: A:0.12, C:0.20, G:0.12, T:0.57


Consensus pattern (46 bp):   
CCATTGCTTTGTTTTTTTTTTTTTTGGTTCAAAGTTTACATGAGCC
Done.