Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008832.1 Corchorus capsularis cultivar CVL-1 contig08853, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2883
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.28


Found at i:862 original size:30 final size:32

Alignment explanation


    Indices: 788--879  Score: 98
    Period size: 33  Copynumber: 2.8  Consensus size: 32

        778 GTCCGGATGG

                 *                           
        788 CCCAATCGATGGCCGGTTGTGGCCGGTTGGTGC
          1 CCCAAGCGATGGCCGGTTGTGGCCGGTT-GTGC

            *           *          *        
        821 GCCAAGCGATGGGCGGTTGTGGCTGG-T-TGC
          1 CCCAAGCGATGGCCGGTTGTGGCCGGTTGTGC

                *                        
        851 CCCATGCGATGGCCGGTCATGTGGCCGGT
          1 CCCAAGCGATGGCCGGT--TGTGGCCGGT

        880 GTTGCGCGGC


Statistics
Matches: 48,  Mismatches: 8, Indels: 6
        0.77            0.13        0.10

Matches are distributed among these distances:
  30   17  0.35
  32    9  0.19
  33   22  0.46

ACGTcount: A:0.10, C:0.26, G:0.41, T:0.23


Consensus pattern (32 bp):   
CCCAAGCGATGGCCGGTTGTGGCCGGTTGTGC
Done.