Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008833.1 Corchorus capsularis cultivar CVL-1 contig08854, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55393

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
247--370
33
3.7
33
81
8
135
8
25
41
25
1.82
1296--1332
3
12.3
3
100
0
74
0
35
0
64
0.94
6704--6766
29
2.2
27
83
10
81
22
28
12
36
1.91
6907--6971
29
2.2
28
86
7
94
35
15
27
21
1.94
6918--6993
29
2.6
29
81
8
82
35
14
31
18
1.91
7356--7444
46
1.9
46
93
0
151
25
23
24
25
2.00
29628--29659
13
2.4
14
94
5
57
59
28
12
0
1.34
35136--35186
25
2.0
25
96
0
93
47
3
33
15
1.64
36168--36226
6
10.0
6
75
17
52
32
1
20
45
1.61
45952--46008
30
1.9
29
85
3
78
14
19
7
59
1.57
53822--54316
123
4.0
123
95
0
882
12
25
31
30
1.92

Tables:   1

The End!