Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008835.1 Corchorus capsularis cultivar CVL-1 contig08856, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10897
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32


Found at i:4801 original size:21 final size:21

Alignment explanation


    Indices: 4775--4827  Score: 97
    Period size: 21  Copynumber: 2.5  Consensus size: 21

       4765 CCGACGCTAG

                  *              
       4775 CTGTGCGCCCAGGCGCTTTGC
          1 CTGTGCACCCAGGCGCTTTGC

                                 
       4796 CTGTGCACCCAGGCGCTTTGC
          1 CTGTGCACCCAGGCGCTTTGC

                       
       4817 CTGTGCACCCA
          1 CTGTGCACCCA

       4828 TGTGCCCTGG


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  21   31  1.00

ACGTcount: A:0.09, C:0.40, G:0.28, T:0.23


Consensus pattern (21 bp):   
CTGTGCACCCAGGCGCTTTGC
Done.