Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008839.1 Corchorus capsularis cultivar CVL-1 contig08860, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44044

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20--61
14
2.7
15
82
14
50
54
2
28
14
1.52
1748--1773
6
4.3
6
100
0
52
69
0
15
15
1.20
11585--11726
41
3.4
41
81
10
164
44
11
17
26
1.83
11767--12251
41
11.5
41
80
10
534
47
10
21
20
1.80
11771--12251
123
3.8
123
86
10
698
47
10
21
20
1.80
11871--11979
56
1.9
56
92
3
184
48
9
24
17
1.76
11830--12020
97
2.0
97
91
4
314
48
9
22
19
1.78
11787--12251
138
3.6
135
89
6
606
47
10
21
20
1.79
12244--12418
37
4.9
37
82
8
186
41
9
21
26
1.84
14043--14072
2
15.0
2
92
0
51
53
0
0
46
1.00
21112--21269
82
1.9
82
85
2
219
31
20
15
31
1.94
26788--26825
18
2.1
18
95
0
67
57
5
5
31
1.43
26945--26990
17
2.6
18
83
13
60
41
13
2
43
1.55
28483--28524
23
1.9
22
90
9
68
26
9
7
57
1.56
28488--28538
22
2.3
23
82
3
59
29
17
7
45
1.77
28541--28629
22
4.2
21
68
20
60
39
13
10
37
1.78
28663--28855
69
2.9
68
78
5
169
36
16
10
35
1.84
28663--28849
22
8.4
22
71
7
99
36
17
10
36
1.83
29610--29652
21
2.1
21
86
4
61
20
25
18
34
1.96
29621--29658
20
2.0
20
85
15
53
23
26
15
34
1.95
39306--39373
24
2.8
24
80
10
84
61
10
25
2
1.42
40273--40300
2
14.0
2
100
0
56
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43464--43545
38
2.1
40
90
6
132
40
8
0
51
1.33
43486--43546
17
3.4
17
68
16
50
40
8
0
50
1.32

Tables:   1

The End!