Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008841.1 Corchorus capsularis cultivar CVL-1 contig08862, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23047

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3176--3284
22
5.2
20
68
24
64
32
11
9
46
1.72
3132--3283
62
2.5
62
93
0
259
34
13
8
43
1.74
3251--3400
22
6.8
22
67
13
85
34
14
10
42
1.78
3474--3533
22
2.7
22
82
5
77
38
13
13
35
1.84
3498--3624
23
5.6
22
80
10
123
37
16
9
36
1.81
3498--3703
22
9.5
22
73
9
102
34
15
9
39
1.80
3975--4043
30
2.2
32
85
10
90
55
4
13
27
1.57
4526--4773
123
2.0
120
86
6
340
31
8
20
39
1.83
5669--5698
15
2.0
15
100
0
60
20
20
33
26
1.97
6778--6833
27
2.1
27
93
0
94
25
23
16
35
1.94
9236--9280
21
2.1
21
91
0
72
11
20
6
62
1.50
11057--11137
39
2.2
35
78
16
99
25
14
3
55
1.56
12419--12801
156
2.5
156
78
10
424
33
14
18
34
1.90
13453--13497
23
2.0
23
91
4
74
11
33
13
42
1.79
16150--16380
120
1.9
120
88
0
345
29
13
20
35
1.91
19398--19441
20
2.2
20
87
0
61
43
18
25
13
1.86

Tables:   1

The End!