Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008849.1 Corchorus capsularis cultivar CVL-1 contig08870, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51303

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
438--758
87
3.7
87
88
7
470
43
5
16
33
1.71
415--775
174
2.1
172
84
5
498
47
5
14
32
1.67
8577--8603
2
13.5
2
100
0
54
48
0
0
51
1.00
8605--8691
19
4.6
19
83
7
106
22
11
28
36
1.89
8684--8729
16
2.9
16
76
0
56
19
4
32
43
1.71
9629--9681
23
2.1
25
83
13
65
43
5
5
45
1.51
9735--9790
25
2.2
25
77
0
67
21
28
33
16
1.95
12333--12395
27
2.3
27
94
0
108
20
42
9
26
1.83
13038--13087
19
2.6
19
93
0
82
26
6
30
38
1.80
13080--13135
16
3.5
16
87
0
85
19
0
35
44
1.51
14295--14381
31
2.9
31
89
6
126
40
11
18
29
1.86
14439--14467
11
2.5
12
94
5
51
17
31
31
20
1.96
14520--14568
24
2.0
24
100
0
98
28
16
8
46
1.75
17720--17833
52
2.2
52
95
0
210
14
33
3
49
1.60
18064--18108
21
2.1
21
87
0
63
35
6
17
40
1.76
22461--22485
11
2.3
11
100
0
50
16
20
0
64
1.30
31298--31360
30
2.1
31
93
3
110
42
36
6
14
1.71
34171--34260
45
2.0
45
91
4
146
35
20
20
24
1.96
34341--34486
72
2.0
72
98
0
283
30
10
18
41
1.84
35180--35209
3
10.0
3
92
0
51
63
3
0
33
1.11
37544--37569
10
2.6
10
100
0
52
30
7
23
38
1.83
38952--38993
5
8.8
5
84
10
61
57
0
42
0
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39811--39841
6
5.2
6
92
0
53
51
0
12
35
1.40
40529--40562
17
2.0
17
100
0
68
17
11
23
47
1.81
47977--48001
7
3.6
7
100
0
50
28
44
0
28
1.55

Tables:   1

The End!