Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008850.1 Corchorus capsularis cultivar CVL-1 contig08871, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41350

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
135--369
22
10.8
22
65
16
71
34
14
9
41
1.78
76--227
62
2.5
62
90
2
225
34
13
8
44
1.74
197--782
22
26.9
22
69
14
209
36
15
9
39
1.79
534--606
38
1.9
38
88
0
110
35
15
8
41
1.77
862--981
22
5.5
22
75
7
100
33
14
10
42
1.78
1039--1133
37
2.6
37
81
6
129
54
11
20
13
1.69
1250--1322
31
2.3
32
86
6
96
46
4
16
32
1.66
1426--1491
31
2.1
31
88
5
98
45
3
18
33
1.65
1183--1515
169
2.0
169
94
2
589
44
6
13
35
1.68
3416--3497
27
3.0
27
89
0
119
28
30
24
17
1.97
4210--4415
103
2.0
103
96
0
376
23
30
27
18
1.98
4490--4598
54
2.0
54
85
0
146
44
12
22
20
1.85
4567--4771
96
2.1
96
97
0
383
42
15
20
21
1.89
4885--5397
75
6.8
76
77
8
482
33
21
18
26
1.96
4861--5251
150
2.6
150
93
1
660
34
20
17
26
1.96
4885--5397
150
3.4
148
84
7
571
33
21
18
26
1.96
5405--5623
68
3.2
68
85
3
307
39
22
12
25
1.90
6447--6530
27
3.1
27
79
6
98
27
28
26
17
1.98
7809--7867
15
3.7
16
90
4
93
5
11
38
44
1.63
7812--7867
16
3.5
16
92
4
87
5
10
41
42
1.62
9669--9722
27
2.0
27
100
0
108
51
3
14
29
1.60
9666--9714
14
3.6
14
72
5
55
53
4
14
28
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10027--10064
11
3.5
11
89
10
51
39
0
2
57
1.12
15419--15479
3
20.3
3
77
0
50
6
72
1
19
1.16
15416--15479
9
7.1
9
80
0
56
7
71
1
18
1.18
15404--15477
21
3.7
21
78
5
64
12
71
1
14
1.21
19494--19531
20
2.0
20
84
5
51
28
7
5
57
1.49
20008--20033
12
2.2
12
100
0
52
69
0
7
23
1.14
20142--20266
61
2.0
61
96
3
234
48
17
9
24
1.77
20522--21524
439
2.3
436
83
5
1193
31
12
13
42
1.81
21901--21974
15
4.7
16
75
18
75
58
1
2
37
1.21
21940--21974
5
7.2
5
93
6
63
60
0
0
40
0.97
21901--21969
27
2.6
27
71
15
72
57
1
2
37
1.22
27750--27795
20
2.2
21
92
3
76
23
6
17
52
1.68
27940--27986
18
2.5
20
75
10
53
19
0
17
63
1.30
31651--31699
24
2.0
24
100
0
98
48
12
26
12
1.75
37563--37634
35
2.1
35
100
0
144
22
29
22
26
1.99
37795--37867
35
2.1
35
97
0
137
27
16
27
28
1.97

Tables:   1

The End!