Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008855.1 Corchorus capsularis cultivar CVL-1 contig08876, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11633

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2443--2979
135
4.0
135
95
0
966
39
19
23
18
1.93
6969--7019
7
7.7
7
95
4
81
84
0
0
15
0.63
6971--7019
6
7.7
6
97
2
71
85
0
0
14
0.59
7570--7598
9
3.2
9
100
0
58
44
10
34
10
1.73
7726--7850
16
7.9
16
73
9
87
12
20
34
32
1.90
7766--7841
32
2.4
32
82
4
100
14
23
34
27
1.94
10637--10683
13
3.5
13
72
16
51
12
25
0
61
1.31
10744--11214
21
22.1
21
69
17
217
21
21
5
52
1.66
10758--10946
35
5.1
35
82
12
227
21
21
6
50
1.70
10804--10998
35
5.2
36
85
11
268
21
20
6
52
1.67
10807--10998
71
2.6
72
88
9
278
21
19
6
52
1.68
11028--11068
15
2.9
14
85
7
55
19
17
7
56
1.64
10935--11210
85
3.2
85
85
5
308
21
21
4
52
1.64
10911--11214
128
2.4
127
83
6
355
20
21
4
53
1.63
10744--11202
106
4.3
107
74
16
312
21
21
5
51
1.67
10906--11210
43
7.1
42
82
6
337
20
21
4
52
1.64
11312--11519
38
5.5
38
90
2
303
27
15
7
49
1.71
11277--11519
76
3.2
75
85
5
303
27
15
7
50
1.70
11275--11519
114
2.1
114
84
8
327
26
15
7
50
1.70

Tables:   1

The End!