genome.fa.s8859.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008859.1 Corchorus capsularis cultivar CVL-1 contig08880, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73087

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83--120	19	2.0	19	94	0	67	50	5	10	34	1.59
2001--2518	121	4.3	121	89	1	768	28	30	28	11	1.92
2621--2702	25	3.3	25	70	3	67	31	25	30	12	1.92
2617--2727	50	2.2	50	78	9	127	30	26	31	11	1.92
2707--3175	98	4.8	98	90	0	704	31	24	31	12	1.92
3094--3248	73	2.1	73	93	0	265	30	25	30	13	1.94
2995--3346	171	2.1	171	87	1	508	32	23	30	14	1.94
3174--3444	98	2.8	98	87	0	398	32	23	29	13	1.93
3340--3393	25	2.2	25	83	12	67	31	29	25	12	1.93
2901--3467	269	2.1	269	93	0	974	32	23	29	14	1.94
3482--3636	73	2.1	73	92	0	256	32	23	33	10	1.88
3802--3857	25	2.2	25	90	0	85	25	30	39	5	1.78
5774--5918	56	2.6	56	87	0	200	35	6	19	37	1.79
7031--7055	12	2.1	12	100	0	50	52	8	16	24	1.70
9787--9846	28	2.1	28	84	6	77	46	5	8	40	1.56
16375--16399	3	8.3	3	100	0	50	68	0	0	32	0.90
23981--24325	180	1.9	180	89	1	530	22	29	24	23	1.99
25253--25283	2	15.5	2	100	0	62	51	0	0	48	1.00
28748--28805	29	2.0	29	83	6	73	32	32	1	32	1.68
32326--32674	170	2.1	166	81	5	398	28	14	16	40	1.88
40478--40513	4	9.2	4	93	6	65	0	25	0	75	0.81
42954--43105	62	2.4	64	81	8	177	42	24	9	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42995--43153	62	2.5	61	84	12	203	42	23	8	26	1.82
47453--47482	14	2.1	14	100	0	60	43	13	33	10	1.77
60674--60711	19	2.0	19	94	0	67	31	18	5	44	1.72
72683--72713	10	3.1	10	95	0	53	35	9	3	51	1.51

Tables:   1

The End!