Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008860.1 Corchorus capsularis cultivar CVL-1 contig08881, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94780

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10116--10239
59
2.1
59
98
0
239
29
4
29
36
1.76
10187--10291
51
2.1
51
96
0
192
29
4
31
34
1.78
24302--24347
14
3.4
14
80
14
60
6
34
2
56
1.37
29116--29161
14
3.4
14
80
14
60
6
34
2
56
1.37
29402--29714
166
1.9
166
87
2
468
30
16
14
38
1.88
30004--30062
29
2.0
29
87
6
84
45
0
8
45
1.33
30003--30071
29
2.2
31
82
14
81
47
1
7
43
1.39
39331--39381
17
3.1
16
86
8
66
35
21
21
21
1.96
42806--42834
2
14.5
2
100
0
58
51
0
0
48
1.00
48933--49027
47
2.0
48
93
2
165
42
9
13
34
1.77
53739--53810
26
2.8
26
87
4
103
27
0
26
45
1.54
65819--65848
1
30.0
1
100
0
60
0
0
0
100
0.00
66833--66904
24
3.0
24
80
10
85
4
26
0
69
1.06
66924--66953
12
2.5
12
94
0
51
16
46
30
6
1.73
71699--71757
31
1.9
31
86
6
84
32
11
3
52
1.54
72068--72110
19
2.1
21
84
16
56
27
6
2
62
1.33
72503--72668
22
7.5
22
74
12
108
33
10
18
37
1.85
72704--72764
24
2.7
23
78
9
63
37
9
16
36
1.82
72780--73087
22
13.8
22
70
10
115
39
9
16
33
1.81
73185--73232
19
2.5
19
93
3
78
45
10
18
25
1.81
73223--73760
22
24.7
22
67
16
138
39
10
14
35
1.80
73223--73455
44
5.3
43
73
13
172
42
9
12
35
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74725--74768
20
2.2
20
92
4
72
38
29
2
29
1.69
75468--75510
17
2.5
17
100
0
86
16
16
25
41
1.88
87130--87165
18
2.0
18
94
0
63
50
25
13
11
1.75
89481--89512
12
2.7
12
90
0
55
6
21
43
28
1.77

Tables:   1

The End!