Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008865.1 Corchorus capsularis cultivar CVL-1 contig08886, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84863

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--66
6
11.3
6
73
15
50
7
16
0
75
1.02
1--60
23
2.6
23
82
15
70
8
16
0
75
1.04
4--72
30
2.3
29
85
7
86
8
15
0
75
1.04
467--692
75
3.0
74
84
3
283
30
22
9
38
1.85
4980--5074
22
4.5
21
73
15
72
22
18
5
53
1.64
5306--5367
16
3.8
16
78
14
63
25
17
8
48
1.75
5339--5379
15
2.7
16
82
17
52
24
17
9
48
1.76
5312--5448
71
1.9
72
87
1
204
27
18
7
45
1.76
5398--5765
55
6.7
54
92
2
574
25
19
8
47
1.76
6623--6758
49
2.8
49
82
5
152
34
19
7
38
1.80
7520--7563
16
2.8
16
85
0
70
38
25
9
27
1.86
8699--8742
23
1.9
23
100
0
88
45
22
13
18
1.84
9171--9246
28
2.8
27
83
2
89
46
25
11
17
1.82
11329--11396
12
5.7
12
70
13
50
72
2
14
10
1.23
14283--14332
14
3.7
13
84
7
55
42
6
14
38
1.70
15546--15621
10
7.6
10
71
11
57
80
3
2
13
0.96
15573--15620
23
2.2
20
82
13
60
85
0
4
10
0.73
17069--17673
56
10.5
56
87
4
766
35
12
25
27
1.92
17434--17682
127
2.0
127
89
1
383
37
11
23
27
1.89
17754--17865
56
2.0
56
82
0
134
24
15
16
43
1.86
18088--18154
26
2.5
27
82
4
82
16
16
26
40
1.89
36192--36420
114
2.0
114
99
0
449
26
13
38
21
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37700--37748
20
2.3
22
82
6
57
16
16
4
63
1.46
39592--39648
27
2.1
27
83
3
71
54
3
12
29
1.54
39591--39631
21
2.0
21
85
4
57
53
2
12
31
1.51
44866--44987
16
7.8
16
90
6
196
4
13
39
41
1.67
44866--44987
31
3.9
32
90
6
196
4
13
39
41
1.67
44866--44989
63
2.0
63
93
3
214
5
13
38
41
1.68
45817--45875
16
3.7
16
86
8
68
5
16
42
35
1.71
57170--57220
27
2.0
24
81
11
57
54
7
7
29
1.57
57206--57280
26
2.8
26
91
2
123
42
22
14
20
1.88
58006--58038
5
6.4
5
96
3
57
81
0
18
0
0.68
61993--62026
16
2.0
18
88
11
54
14
23
2
58
1.50
62675--62741
21
3.2
21
93
0
116
40
7
23
28
1.82
66141--66199
30
2.0
30
86
0
82
27
33
5
33
1.79
66886--67040
51
3.2
51
62
23
132
50
20
5
24
1.68
66877--67075
96
2.1
96
99
0
389
50
22
5
21
1.69
67236--67278
18
2.3
19
88
8
70
39
30
4
25
1.76
70365--70394
2
15.0
2
100
0
60
50
0
0
50
1.00
73739--73818
30
2.6
30
82
2
88
25
21
13
40
1.90
73762--73820
30
2.0
30
93
0
100
20
16
16
45
1.85
74516--74594
29
2.6
31
86
4
108
36
12
24
26
1.91
79107--79135
2
14.5
2
100
0
58
48
0
0
51
1.00
81324--81354
16
1.9
16
93
0
53
51
0
16
32
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83232--83264
16
2.1
16
100
0
66
57
0
12
30
1.35
83501--83866
105
3.5
105
93
1
594
41
8
8
41
1.67

Tables:   1

The End!