Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008866.1 Corchorus capsularis cultivar CVL-1 contig08887, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38140

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6941--6970
15
2.0
15
100
0
60
53
20
0
26
1.46
12083--12415
167
2.0
167
83
4
422
30
14
15
40
1.86
13828--13864
15
2.3
17
86
9
51
16
0
40
43
1.48
14757--14830
36
2.1
36
100
0
148
31
16
16
36
1.91
18402--18487
45
1.9
45
92
0
145
37
18
19
24
1.94
20423--20453
13
2.5
13
94
5
55
35
16
22
25
1.94
20614--20638
10
2.5
10
100
0
50
8
0
0
92
0.40
21465--21498
10
3.4
10
91
0
59
32
5
17
44
1.73
21460--21498
20
2.0
20
94
0
69
30
7
17
43
1.77
21609--21647
12
3.6
12
74
25
50
30
15
28
25
1.96
22136--22177
16
2.6
16
75
14
50
50
38
9
2
1.48
22339--22413
32
2.3
32
88
4
107
38
34
8
18
1.80
24363--24493
65
2.0
65
98
0
253
44
16
12
26
1.83
29524--29791
142
1.9
143
94
1
475
42
12
13
31
1.80
34820--34946
63
2.0
63
96
3
238
32
18
11
38
1.85
35039--35068
14
2.1
14
100
0
60
43
30
0
26
1.55

Tables:   1

The End!