Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008872.1 Corchorus capsularis cultivar CVL-1 contig08893, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51553

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3693--3733
8
5.2
8
97
2
75
0
9
0
90
0.46
18566--18597
2
16.0
2
93
0
55
53
0
46
0
1.00
18865--18889
7
3.6
7
100
0
50
36
0
48
16
1.46
18962--18988
1
27.0
1
100
0
54
100
0
0
0
0.00
31229--31288
31
1.9
31
86
6
86
31
16
5
46
1.69
31368--31392
13
1.9
13
100
0
50
36
0
0
64
0.94
31445--31573
66
2.0
66
83
6
163
35
10
17
35
1.85
31443--31627
22
8.3
21
76
10
147
32
10
18
37
1.85
31659--32026
22
16.9
21
70
14
153
39
9
17
34
1.82
31885--32050
88
1.9
87
80
7
192
44
10
10
33
1.74
32155--32403
22
11.5
21
70
16
102
40
8
16
34
1.78
32300--32401
23
4.5
23
82
3
118
38
6
14
40
1.73
32277--32384
45
2.4
44
84
4
135
39
7
15
37
1.76
32132--32517
22
17.6
22
66
17
88
38
9
15
37
1.80
46445--46515
37
1.9
37
91
0
115
39
5
15
39
1.71
49362--49432
37
1.9
37
94
0
124
38
8
16
36
1.80
50429--50481
26
2.0
26
96
0
97
24
9
26
39
1.86
50841--50927
31
2.8
31
96
0
156
21
19
10
48
1.79

Tables:   1

The End!