Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008874.1 Corchorus capsularis cultivar CVL-1 contig08895, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55410

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
980--1013
12
2.8
12
90
4
50
0
8
2
88
0.62
2539--2582
22
2.0
22
95
0
79
52
11
13
22
1.72
14189--14247
30
2.0
30
90
6
93
20
28
20
30
1.97
15626--15688
30
2.1
30
85
5
83
36
14
4
44
1.66
25919--25957
15
2.6
16
88
8
55
17
10
10
61
1.55
26215--26258
6
7.3
6
92
0
70
0
0
15
84
0.63
35592--35631
12
3.2
12
92
3
62
85
5
7
2
0.83
36036--36079
19
2.3
19
85
11
63
0
15
4
79
0.89
37629--37681
11
5.2
10
80
17
56
41
0
18
39
1.51
37639--37678
18
2.2
19
90
4
64
45
0
20
35
1.51
37629--37688
30
2.0
30
87
6
86
43
1
18
36
1.60
39629--39659
6
5.3
6
96
3
55
51
12
0
35
1.40
41003--41034
11
2.9
11
90
0
55
43
18
0
37
1.51
40980--41034
19
2.6
22
75
21
64
40
18
1
40
1.61
45724--45763
18
2.2
18
86
4
53
45
5
20
30
1.72
51038--51085
24
1.9
26
87
8
73
14
18
2
64
1.38
51074--51144
28
2.6
27
80
12
74
15
23
1
59
1.45
51206--51286
21
3.9
21
80
6
85
23
23
6
46
1.74
51257--51301
14
3.2
14
78
12
56
24
20
6
48
1.73
51316--51361
14
3.4
14
78
3
58
17
21
4
56
1.58
51356--51423
26
2.6
27
81
6
68
26
19
4
50
1.66
51396--51465
32
2.2
32
87
7
97
22
18
5
52
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51501--51616
40
2.9
40
96
2
207
22
23
5
49
1.70
51684--51747
16
4.1
16
78
8
78
15
21
6
56
1.62
51589--51784
96
2.0
99
88
3
290
16
20
6
55
1.64
51794--51898
45
2.3
47
83
5
124
29
16
7
46
1.74
51853--51993
37
3.8
38
75
20
147
27
19
6
46
1.74
52025--52118
38
2.4
39
82
3
109
22
21
6
50
1.71
52215--52260
23
2.0
23
86
0
65
6
19
6
67
1.36

Tables:   1

The End!