genome.fa.s8876.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008876.1 Corchorus capsularis cultivar CVL-1 contig08897, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39002

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2958--2987	7	4.3	7	100	0	60	26	0	13	60	1.34
10177--10597	149	2.8	150	82	1	486	31	14	19	34	1.91
13834--13906	32	2.2	32	90	2	110	24	23	30	21	1.99
23193--23252	21	2.8	21	76	18	61	25	18	6	50	1.71
23227--23359	29	4.7	29	75	10	98	23	20	3	53	1.59
23328--23437	7	16.6	7	64	23	51	16	24	2	56	1.53
23390--23451	20	3.4	20	66	25	64	14	24	1	59	1.44
23328--23462	34	4.1	34	93	4	240	16	23	2	57	1.53
23446--23742	22	13.5	22	74	10	202	19	18	6	55	1.62
23446--23751	44	7.0	43	75	13	234	19	18	6	55	1.63
27910--27983	27	2.8	25	87	6	103	48	28	9	13	1.73
31050--31089	21	1.9	21	84	0	53	20	17	10	52	1.72
31037--31150	35	3.2	35	70	11	99	23	19	4	52	1.64
31152--31203	14	3.9	14	77	7	63	15	23	3	57	1.54
31136--31234	34	3.3	27	77	20	108	16	24	3	56	1.54
31165--31234	34	2.1	34	94	0	122	15	24	2	57	1.52
31218--31541	22	15.0	22	76	13	255	20	17	6	55	1.64
31428--31513	15	5.7	15	68	25	56	23	13	5	56	1.59
36694--36819	22	5.8	21	74	5	72	38	12	12	36	1.82
36694--36819	44	2.9	43	80	9	114	38	12	12	36	1.82
36742--36841	22	4.5	22	72	18	82	40	15	10	35	1.80
36957--37031	22	3.4	22	76	10	73	37	9	18	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36948--37031	44	1.9	44	80	4	98	36	8	20	34	1.83
37016--37076	23	2.7	22	80	5	77	37	9	8	44	1.68
36928--37090	22	7.4	21	72	11	71	38	8	17	36	1.80
37144--37309	22	7.6	22	75	4	113	39	9	15	35	1.79
37635--37714	22	3.7	20	77	12	70	42	10	12	35	1.76
37633--37733	44	2.3	44	84	6	125	43	9	12	33	1.76
37808--37877	23	3.1	23	87	4	72	37	7	17	38	1.77
37825--37877	23	2.3	23	96	3	99	37	3	18	39	1.69
37935--38050	22	5.2	23	71	13	91	34	10	17	37	1.84
38082--38135	22	2.5	22	87	6	74	42	7	9	40	1.65
37967--38150	22	8.5	22	66	17	73	43	7	14	34	1.73

Tables:   1

The End!