Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008880.1 Corchorus capsularis cultivar CVL-1 contig08901, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66642

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
279--333
23
2.4
23
84
0
65
7
23
41
27
1.80
1614--1651
19
2.1
18
85
9
51
52
2
0
44
1.14
1920--1954
1
35.0
1
100
0
70
100
0
0
0
0.00
3797--4483
360
1.9
360
81
6
829
30
24
17
27
1.97
12657--12703
22
2.1
22
96
0
85
42
4
6
46
1.48
12657--12699
11
3.9
11
90
0
68
41
4
6
46
1.51
14380--14423
3
15.0
3
81
13
56
61
0
0
38
0.96
17065--17557
167
3.0
163
84
3
603
37
15
15
30
1.89
20657--20684
12
2.3
12
100
0
56
42
17
0
39
1.50
28868--28912
21
2.1
21
95
0
81
31
15
15
37
1.89
34635--34680
21
2.1
22
84
4
58
30
10
6
52
1.62
34644--34691
23
2.2
21
85
7
60
31
12
10
45
1.76
38487--38528
22
1.9
22
90
0
66
19
21
23
35
1.96
44229--44476
78
3.2
78
93
1
417
50
0
13
36
1.45
44437--44690
126
2.0
127
97
0
483
44
7
14
33
1.73
46303--46327
1
25.0
1
100
0
50
0
0
0
100
0.00
47796--47841
21
2.2
21
84
7
58
32
8
8
50
1.64
48050--48113
2
30.5
2
81
9
56
42
6
4
46
1.49
48019--48104
38
2.3
38
84
8
104
39
5
10
44
1.63
53274--53501
107
2.1
109
89
1
352
40
7
9
42
1.65
58282--58321
10
3.9
10
86
3
53
30
15
2
52
1.55
58555--58606
26
2.0
26
88
0
77
38
7
3
50
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58557--58612
26
2.2
26
83
0
67
39
8
3
48
1.52
58909--58940
12
2.4
14
90
10
50
46
3
9
40
1.52
62649--62711
29
2.1
29
85
2
81
36
25
12
25
1.91

Tables:   1

The End!