Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008882.1 Corchorus capsularis cultivar CVL-1 contig08903, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71779

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9378--9995
41
15.9
40
79
11
535
24
17
22
35
1.95
9453--9995
117
4.7
116
86
7
608
25
17
22
35
1.95
9453--9873
117
3.6
117
88
4
609
25
17
21
35
1.95
9770--9993
75
2.9
75
89
5
322
21
17
23
37
1.94
10763--10896
52
2.6
52
83
8
186
46
14
20
18
1.84
17558--17614
8
7.9
7
78
21
64
52
0
5
42
1.24
18667--18707
21
2.0
22
90
9
68
26
12
4
56
1.56
18833--18890
21
2.8
21
73
5
55
24
12
10
53
1.68
21603--21628
13
2.0
13
100
0
52
7
7
23
61
1.49
26302--26341
21
2.0
20
85
14
55
47
30
7
15
1.72
26311--26365
21
2.8
20
78
13
60
45
25
12
16
1.83
26351--26398
25
1.9
25
87
8
71
43
27
8
20
1.80
44887--44956
31
2.3
30
77
2
77
25
14
27
32
1.94
44985--45014
15
1.9
16
93
6
53
46
0
0
53
1.00
45429--45746
157
2.0
157
93
1
539
30
17
14
37
1.89
48018--48091
28
2.6
29
89
2
105
14
12
29
43
1.82
51136--51180
23
1.9
24
86
4
65
8
20
20
51
1.73
52211--52261
26
2.0
26
88
7
77
50
3
17
27
1.63
52266--52473
7
28.9
7
65
18
70
57
2
22
17
1.51
52249--52328
22
3.7
22
81
6
83
58
1
22
17
1.45
52265--52416
58
2.8
56
67
23
124
58
2
21
17
1.50
52259--52452
35
5.4
35
78
15
191
57
2
22
17
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52441--52503
15
4.3
15
74
11
67
57
6
14
22
1.60
52432--52495
29
2.2
28
83
10
76
54
4
20
20
1.62
52446--52605
22
7.1
21
68
17
72
54
5
18
21
1.64
52441--52725
65
4.5
64
73
17
193
53
5
18
22
1.65
52391--52660
122
2.2
120
79
7
276
53
5
20
21
1.65
52506--52776
21
12.9
22
73
16
125
52
5
19
22
1.65
52527--52768
79
3.0
78
77
13
254
52
5
20
21
1.66
52506--52784
101
2.7
102
84
6
287
51
5
20
22
1.67
52621--52776
22
7.2
22
84
5
185
54
3
19
21
1.60
52637--52786
21
7.0
21
81
6
151
52
4
21
22
1.63
52815--52855
9
4.7
9
80
14
50
60
0
26
12
1.31
55097--55122
6
4.3
6
100
0
52
34
0
15
50
1.45
55421--55472
20
2.7
19
80
16
70
57
5
15
21
1.58
56550--56592
15
2.9
15
96
0
77
41
23
27
6
1.80
60895--60937
6
7.3
6
97
2
79
34
0
13
51
1.42
65929--66002
16
4.6
16
88
6
114
4
10
40
44
1.58
66765--66834
16
4.3
16
78
8
79
2
20
50
27
1.62
66765--66807
6
7.7
6
85
15
56
0
20
53
25
1.46

Tables:   1

The End!