Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008883.1 Corchorus capsularis cultivar CVL-1 contig08904, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4758
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31


Found at i:1109 original size:22 final size:23

Alignment explanation


    Indices: 1084--1126  Score: 70
    Period size: 22  Copynumber: 1.9  Consensus size: 23

       1074 TAACATATCT

                                   
       1084 TCATTCAAATAT-ATTTGTAATC
          1 TCATTCAAATATGATTTGTAATC

                      *          
       1106 TCATTCAAATTTGATTTGTAA
          1 TCATTCAAATATGATTTGTAA

       1127 AGTTGTTGTA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  22   11  0.58
  23    8  0.42

ACGTcount: A:0.35, C:0.12, G:0.07, T:0.47


Consensus pattern (23 bp):   
TCATTCAAATATGATTTGTAATC

Done.