Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008884.1 Corchorus capsularis cultivar CVL-1 contig08905, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3245
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29


Found at i:1249 original size:13 final size:13

Alignment explanation


    Indices: 1231--1256  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       1221 GGCAACCCAA

                         
       1231 TTTTTAATTTTTG
          1 TTTTTAATTTTTG

                         
       1244 TTTTTAATTTTTG
          1 TTTTTAATTTTTG

       1257 AATTTTTATA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77


Consensus pattern (13 bp):   
TTTTTAATTTTTG
Done.