Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008886.1 Corchorus capsularis cultivar CVL-1 contig08907, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45081

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7740--7880
31
4.5
31
79
0
147
19
22
26
31
1.98
14177--14254
29
2.6
30
79
6
86
38
29
14
17
1.89
20842--20882
22
1.9
22
85
5
57
43
19
9
26
1.82
24366--24420
27
2.0
27
100
0
110
25
14
10
49
1.76
31738--31795
15
3.6
17
79
6
59
32
3
1
62
1.22
33327--33379
17
3.2
16
84
10
70
35
22
20
20
1.96
34930--35008
36
2.2
36
95
0
140
26
7
18
46
1.76
35731--35765
18
1.9
18
94
0
61
31
8
34
25
1.86
35780--35823
20
2.2
20
91
0
70
29
4
34
31
1.78
42268--42390
62
2.0
62
90
0
192
41
15
13
30
1.85
44360--44498
69
2.0
68
95
1
251
30
9
16
43
1.80

Tables:   1

The End!