Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008887.1 Corchorus capsularis cultivar CVL-1 contig08908, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 29393
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:1541 original size:34 final size:34

Alignment explanation


    Indices: 1467--1543  Score: 102
    Period size: 34  Copynumber: 2.3  Consensus size: 34

       1457 AGGTTAGAGC

                                       **     
       1467 AATT-TGTCTTCACAATTTGAGTGTGTTTACAAA
          1 AATTATGTCTTCACAATTTGAGTGTGTGCACAAA

            * *                          *    
       1500 CAGTATGTCTTCACAATTTGAGTGTGTGCGCAAA
          1 AATTATGTCTTCACAATTTGAGTGTGTGCACAAA

                      
       1534 AATTATGTCT
          1 AATTATGTCT

       1544 CATTTCTTTT


Statistics
Matches: 36,  Mismatches: 7, Indels: 1
        0.82            0.16        0.02

Matches are distributed among these distances:
  33    2  0.06
  34   34  0.94

ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39


Consensus pattern (34 bp):   
AATTATGTCTTCACAATTTGAGTGTGTGCACAAA

Found at i:25633 original size:207 final size:207

Alignment explanation


    Indices: 25278--25691  Score: 819
    Period size: 207  Copynumber: 2.0  Consensus size: 207

      25268 GGTTAGTACG

                                                                             
      25278 CGTGCGAATAATGCAAACTTGGGATTGACATTTGCTCTGGCTTTGTCGGCTCTTTGCTCCATCTT
          1 CGTGCGAATAATGCAAACTTGGGATTGACATTTGCTCTGGCTTTGTCGGCTCTTTGCTCCATCTT

                                                                             
      25343 TGGTCTCTCCGCTGTGCGATTTCTTTCTCCTTTCTTTTTTTCTCCCATATTTTTTATCCTTTTTG
         66 TGGTCTCTCCGCTGTGCGATTTCTTTCTCCTTTCTTTTTTTCTCCCATATTTTTTATCCTTTTTG

                                                                             
      25408 TCTCCCTTCTCACCCACTCCCCCTGTTTCCTGTAATTCCTCCGATGTAGTTCCTTGGTTACCTGC
        131 TCTCCCTTCTCACCCACTCCCCCTGTTTCCTGTAATTCCTCCGATGTAGTTCCTTGGTTACCTGC

                        
      25473 TCCTTTTCTGTT
        196 TCCTTTTCTGTT

                                                                             
      25485 CGTGCGAATAATGCAAACTTGGGATTGACATTTGCTCTGGCTTTGTCGGCTCTTTGCTCCATCTT
          1 CGTGCGAATAATGCAAACTTGGGATTGACATTTGCTCTGGCTTTGTCGGCTCTTTGCTCCATCTT

                                                                             
      25550 TGGTCTCTCCGCTGTGCGATTTCTTTCTCCTTTCTTTTTTTCTCCCATATTTTTTATCCTTTTTG
         66 TGGTCTCTCCGCTGTGCGATTTCTTTCTCCTTTCTTTTTTTCTCCCATATTTTTTATCCTTTTTG

                                         *                                   
      25615 TCTCCCTTCTCACCCACTCCCCCTGTTTCTTGTAATTCCTCCGATGTAGTTCCTTGGTTACCTGC
        131 TCTCCCTTCTCACCCACTCCCCCTGTTTCCTGTAATTCCTCCGATGTAGTTCCTTGGTTACCTGC

                        
      25680 TCCTTTTCTGTT
        196 TCCTTTTCTGTT

      25692 TCATTTGGCT


Statistics
Matches: 206,  Mismatches: 1, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 207  206  1.00

ACGTcount: A:0.11, C:0.29, G:0.15, T:0.45


Consensus pattern (207 bp):   
CGTGCGAATAATGCAAACTTGGGATTGACATTTGCTCTGGCTTTGTCGGCTCTTTGCTCCATCTT
TGGTCTCTCCGCTGTGCGATTTCTTTCTCCTTTCTTTTTTTCTCCCATATTTTTTATCCTTTTTG
TCTCCCTTCTCACCCACTCCCCCTGTTTCCTGTAATTCCTCCGATGTAGTTCCTTGGTTACCTGC
TCCTTTTCTGTT
Done.