Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008890.1 Corchorus capsularis cultivar CVL-1 contig08911, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45436

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
550--604
2
29.0
2
75
10
53
41
0
0
58
0.98
5728--5793
33
2.0
33
96
0
123
34
15
18
31
1.92
13271--13296
10
2.6
10
100
0
52
50
19
7
23
1.73
14217--14243
6
4.5
6
100
0
54
29
0
14
55
1.40
17415--17455
21
2.0
21
95
0
73
17
19
31
31
1.95
19143--19218
27
2.8
27
85
0
107
35
25
19
19
1.95
19526--19641
56
2.1
56
83
6
146
37
18
17
26
1.92
19609--19642
18
1.9
17
88
5
50
47
8
17
26
1.77
19581--19850
64
4.2
64
92
1
427
42
17
18
21
1.89
19581--20336
128
6.3
127
79
15
776
44
14
18
23
1.86
19726--19951
51
4.2
51
83
14
301
45
14
17
22
1.85
19662--20075
229
1.8
230
91
2
699
44
14
18
22
1.86
20094--20128
18
1.9
18
88
11
54
54
5
14
25
1.62
19892--20208
64
4.9
64
92
2
496
44
13
17
23
1.85
20148--20301
51
3.0
51
88
0
227
46
11
16
25
1.80
21195--21278
44
1.9
44
97
0
159
13
19
9
58
1.62
24771--24811
18
2.3
19
83
8
50
63
0
9
26
1.25
31276--31341
29
2.2
31
81
7
75
9
16
1
72
1.17
35146--35220
27
2.8
27
83
2
98
37
24
18
20
1.94
37421--37496
27
2.8
27
85
0
98
21
17
23
38
1.93
39800--39829
6
5.0
6
100
0
60
16
0
16
66
1.25
45411--45436
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!