Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008892.1 Corchorus capsularis cultivar CVL-1 contig08913, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2033
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30


Found at i:1428 original size:33 final size:33

Alignment explanation


    Indices: 1391--1465  Score: 98
    Period size: 33  Copynumber: 2.3  Consensus size: 33

       1381 AGCACTAGTG

                          *    *              
       1391 ACCGGCCATGCGACTTGGAGAAGTCCGGCCATC-
          1 ACCGGCCATGCGACATGGACAAGTCCGGCCA-CA

                    *            *           
       1424 ACCGGCCACGCGACATGGACATGTCCGGCCACA
          1 ACCGGCCATGCGACATGGACAAGTCCGGCCACA

                     
       1457 ACCGGCCAT
          1 ACCGGCCAT

       1466 CGCTAGGCGC


Statistics
Matches: 36,  Mismatches: 5, Indels: 2
        0.84            0.12        0.05

Matches are distributed among these distances:
  32    1  0.03
  33   35  0.97

ACGTcount: A:0.23, C:0.37, G:0.28, T:0.12


Consensus pattern (33 bp):   
ACCGGCCATGCGACATGGACAAGTCCGGCCACA
Done.