Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008895.1 Corchorus capsularis cultivar CVL-1 contig08916, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11819

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1010--1060
10
5.0
10
83
4
66
64
0
31
3
1.11
1012--1060
21
2.4
20
93
3
80
63
0
32
4
1.13
3903--3930
2
14.0
2
100
0
56
50
0
0
50
1.00
4509--4614
22
4.8
22
66
12
65
34
12
9
43
1.75
4770--5069
22
13.8
22
71
12
138
35
15
9
39
1.79
4816--4900
23
3.7
23
84
1
100
37
14
7
41
1.73
4794--4900
45
2.4
45
81
9
128
36
14
9
39
1.79
5035--5108
19
3.6
21
83
9
89
28
16
10
44
1.81
5214--5265
22
2.4
22
80
3
61
36
7
9
46
1.66
5343--5443
21
4.6
22
73
15
75
33
14
9
41
1.79
5466--5520
22
2.6
21
77
11
58
38
16
5
40
1.72
5622--5760
22
6.3
22
75
11
113
38
20
9
32
1.84
5905--5947
19
2.2
20
84
16
54
62
2
6
27
1.33
6253--6318
31
2.1
31
86
5
89
50
4
19
25
1.67
6677--6707
16
1.9
16
93
0
53
48
0
3
48
1.17
9290--9469
96
1.9
96
87
6
269
35
8
3
53
1.48
9391--9456
27
2.4
27
85
7
80
43
7
0
48
1.31
9511--10691
331
3.6
331
82
3
1369
32
13
16
37
1.88

Tables:   1

The End!