Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008898.1 Corchorus capsularis cultivar CVL-1 contig08919, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35112

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5594--5624
2
15.0
2
93
6
53
48
3
0
48
1.17
5932--5969
15
2.4
17
87
12
55
36
39
15
7
1.77
9142--9170
2
14.5
2
100
0
58
51
0
0
48
1.00
12548--12682
67
2.0
67
98
0
261
31
15
16
37
1.90
12898--12930
15
2.2
15
89
10
50
33
3
0
63
1.10
25552--25906
177
2.0
175
81
5
414
27
22
20
29
1.98
26309--26333
2
12.5
2
100
0
50
48
0
0
52
1.00
29104--29155
25
2.1
25
96
0
95
19
26
3
50
1.65
29360--29413
2
27.0
2
100
0
108
0
50
0
50
1.00
29440--29486
14
3.3
14
77
13
51
6
4
10
78
1.06
31518--31612
48
2.0
48
97
0
181
22
10
17
49
1.77

Tables:   1

The End!