Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008901.1 Corchorus capsularis cultivar CVL-1 contig08922, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13853
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:944 original size:12 final size:12

Alignment explanation


    Indices: 923--962  Score: 53
    Period size: 12  Copynumber: 3.3  Consensus size: 12

        913 TGTGTGGCCG

                 *      
        923 GTTGCCCCATGT
          1 GTTGCTCCATGT

                       *
        935 GTTGCTCCATGC
          1 GTTGCTCCATGT

             *          
        947 GATGCTCCATGT
          1 GTTGCTCCATGT

                
        959 GTTG
          1 GTTG

        963 GCCGGTCATG


Statistics
Matches: 23,  Mismatches: 5, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  12   23  1.00

ACGTcount: A:0.10, C:0.28, G:0.28, T:0.35


Consensus pattern (12 bp):   
GTTGCTCCATGT

Found at i:10044 original size:21 final size:20

Alignment explanation


    Indices: 10018--10059  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 20

      10008 TCTTGAAGGT

                  *              
      10018 TTGAAGTCCATTGAAGATCAA
          1 TTGAAGACCATTGAAGA-CAA

                   *            
      10039 TTGAAGAGCATTGAAGACAA
          1 TTGAAGACCATTGAAGACAA

             
      10059 T
          1 T

      10060 AAGCAAAGGA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  20    4  0.21
  21   15  0.79

ACGTcount: A:0.40, C:0.12, G:0.21, T:0.26


Consensus pattern (20 bp):   
TTGAAGACCATTGAAGACAA
Done.