genome.fa.s8902.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008902.1 Corchorus capsularis cultivar CVL-1 contig08923, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34678

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1301--1780	237	2.0	237	99	0	951	27	20	23	27	1.99
3605--3727	60	2.0	60	100	0	246	30	4	22	41	1.75
14301--14399	49	2.0	49	100	0	198	43	24	12	20	1.85
16483--16708	16	14.1	16	66	19	98	57	3	20	19	1.54
16497--16749	32	7.9	32	82	2	301	55	3	22	18	1.56
16728--17105	40	9.9	40	71	13	285	51	4	22	21	1.65
16883--17089	70	2.9	71	79	6	231	53	2	23	20	1.59
16930--16981	15	3.4	16	70	20	56	57	3	21	17	1.55
17137--17321	7	25.9	7	69	15	85	54	1	22	21	1.54
17137--17331	36	5.5	36	90	1	295	54	1	22	21	1.53
17293--17337	21	2.1	21	87	0	63	51	2	22	24	1.60
17322--17487	29	5.9	27	81	9	163	57	4	19	18	1.56
17320--17482	27	5.8	29	82	7	140	58	4	19	18	1.55
17405--17455	15	3.5	15	67	5	50	54	5	21	17	1.63
17322--17481	86	1.9	86	82	5	207	58	4	18	18	1.56
23338--23430	48	1.9	48	97	0	177	25	19	23	31	1.98
31709--31785	35	2.2	36	93	4	131	35	9	16	38	1.81
31767--31814	21	2.3	20	86	13	62	47	2	10	39	1.49
31732--31849	56	2.1	56	90	3	184	40	5	13	39	1.69
31788--31939	35	4.3	35	89	0	214	38	7	15	38	1.75
31709--31876	91	1.8	91	88	0	255	38	7	15	39	1.75
31856--31912	16	3.4	16	68	13	51	42	8	14	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32827--32868	20	2.1	21	86	8	61	57	7	7	28	1.52
34163--34188	6	4.3	6	100	0	52	65	19	0	15	1.27

Tables:   1

The End!